KnotProt: A database of proteins with knots and slipknots

Abbreviation:KnotProt

General Information

KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire polypeptide chain and of each of its subchains. The database presents extensive information about the biological function of proteins with non-trivial knotting and enables users to analyze new structures.

Homepage http://knotprot.cent.uw.edu.pl/

Developed in Poland , Switzerland , United States

Created in 2014

Taxonomic range

Scope and data types

How to cite this record FAIRsharing.org: KnotProt; KnotProt: A database of proteins with knots and slipknots; DOI: https://doi.org/10.25504/FAIRsharing.f5b5j1; Last edited: Feb. 22, 2018, 2:58 p.m.; Last accessed: Sep 25 2018 8:01 a.m.

This record is maintained by jamroz

Record updated: Oct. 5, 2016, 9:20 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.f5b5j1' by 'The FAIRsharing Team' at 21:20, 05 Oct 2016 (approved):

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-7255-6476 Tools have changed:  Previous values: Submit Search Browse New values:  Data processes have changed:  Previous values: New values:  submit search browse Organisations have changed:  Previous values: Foundation for Polish Science|Poland NSF Swiss National Foundation The Leverhulme Trust New values:  Foundation for Polish Science|Poland NSF Swiss National Foundation The Leverhulme Trust University of Warsaw Grants have changed:  Previous values: New values:  Sonata BIS 2012/07/E/NZ1/01900

Support

General

support email	jsulkowska@cent.uw.edu.p
online documentation	http://knotprot.cent.uw.edu.pl/learn_mor ...

Additional Information

Contact

Michal Jamroz ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Curation

submit

http://knotprot.cent.uw.edu.pl/submit

Data Access

search	http://knotprot.cent.uw.edu.pl/search/
browse	http://knotprot.cent.uw.edu.pl/browse/

Publications

KnotProt: a database of proteins with knots and slipknots

Jamroz M, Niemyska W, Rawdon EJ, Stasiak A, Millett KC, Sułkowski P, Sulkowska JI
Nucleic Acids Research 2014

Conservation of complex knotting and slipknotting patterns in proteins

Sulkowska JI, Rawdon EJ, Millett KC, Onuchic JN and Stasiak A
Proc. Natl. Acad. Sci. U.S.A 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Protein Data Bank Format

Related Databases

LinkProt: A database of proteins with topological links

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by jamroz

Funds

Swiss National Sciences Foundation (SNCF) (Government body)
Foundation for Polish Science, Warsaw, Poland
The Leverhulme Trust
US National Science Foundation (NSF) (Government body)
National Science Center, Krakow, Poland

Maintains

University of Warsaw

Grant Number(s)

Sonata BIS 2012/07/E/NZ1/01900 (National Science Center, Krakow, Poland)

KnotProt: A database of proteins with knots and slipknots

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