databases > DOI:10.25504/FAIRsharing.f5b5j1

ready KnotProt: A database of proteins with knots and slipknots

Abbreviation:KnotProt

General Information
KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire polypeptide chain and of each of its subchains. The database presents extensive information about the biological function of proteins with non-trivial knotting and enables users to analyze new structures.

Homepage http://knotprot.cent.uw.edu.pl/

Countries that developed this resource Poland , Switzerland , United States

Created in 2014

Taxonomic range

Knowledge Domains 

Subjects 





How to cite this record FAIRsharing.org: KnotProt; KnotProt: A database of proteins with knots and slipknots; DOI: https://doi.org/10.25504/FAIRsharing.f5b5j1; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jul 20 2019 6:58 p.m.


This record is maintained by jamroz

Record updated: Oct. 5, 2016, 9:20 p.m. by The FAIRsharing Team.

Show edit history


Support

General

support email jsulkowska@cent.uw.edu.p
online documentation http://knotprot.cent.uw.edu.pl/learn_mor ...

Additional Information

Contact Michal Jamroz   ORCID

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Curation

submit http://knotprot.cent.uw.edu.pl/submit

Data Access

search http://knotprot.cent.uw.edu.pl/search/
browse http://knotprot.cent.uw.edu.pl/browse/



Publications

KnotProt: a database of proteins with knots and slipknots

Jamroz M, Niemyska W, Rawdon EJ, Stasiak A, Millett KC, Sułkowski P, Sulkowska JI
Nucleic Acids Research 2014

Conservation of complex knotting and slipknotting patterns in proteins

Sulkowska JI, Rawdon EJ, Millett KC, Onuchic JN and Stasiak A
Proc. Natl. Acad. Sci. U.S.A 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by jamroz

Funds

Maintains

Grant Number(s)

  • Sonata BIS 2012/07/E/NZ1/01900 (National Science Center, Krakow, Poland)