macromolecular Crystallographic Information File
How to cite this record FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Oct 27 2021 1:41 a.m.
Record updated: Feb. 15, 2019, 1:25 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.fd28en' by 'The FAIRsharing Team' at 13:26, 15 Feb 2019 (approved): 'name' has been modified: Before: PDBx/mmCIF After: macromolecular Crystallographic Information File 'description' has been modified: Before: PDBx/mmCIF) is a dictionary of data archiving the macromolecule crystallographic experiment and its results. After: PDBx/mmCIF is a dictionary of data archiving macromolecule crystallographic experiments and their results.
Edits to 'https://fairsharing.org/FAIRsharing.fd28en' by 'The FAIRsharing Team' at 20:28, 05 Oct 2018 (approved): 'name' has been modified: Before: macromolecular Crystallographic Information File After: PDBx/mmCIF 'related_standards' has been modified: Before: After: Crystallographic Information Framework Added: Crystallographic Information Framework Removed: 'contactEmail' has been modified: Before: After: firstname.lastname@example.org 'contact' has been modified: Before: After: General Contact 'miriam_id' has been modified: Before: None After: 'domains' has been modified: Before: Life Science Molecular entity Molecular structure X-ray crystallography assay After: Biology Life Science Molecular Biology Molecular entity Molecular structure Protein X-ray crystallography assay Added: Biology Molecular Biology Protein Removed: 'shortname' has been modified: Before: mmCIF After: PDBx/mmCIF 'description' has been modified: Before: macromolecular Crystallographic Information File (mmCIF) is a dictionary of data archiving the macromolecule crystallographic experiment and its results. After: PDBx/mmCIF) is a dictionary of data archiving the macromolecule crystallographic experiment and its results.
Edits to 'https://fairsharing.org/FAIRsharing.fd28en' by 'The FAIRsharing Team' at 19:47, 24 Oct 2016 (approved): 'description' has been modified: Before: "macromolecular Crystallographic Information File" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://mmcif.pdb.org/. This text was generated automatically. If you work on the project responsible for "macromolecular Crystallographic Information File" then please consider helping us by claiming this record and updating it appropriately. After: macromolecular Crystallographic Information File (mmCIF) is a dictionary of data archiving the macromolecule crystallographic experiment and its results. Countries have changed: Previous values: New values: USA Domain list has changed: Previous values: Molecular entity|material|http://purl.obolibrary.org/obo/CHEBI_23367 Molecular structure|information content entity|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Chemical.owl#CHEBI_24431 X-ray crystallography assay|process|http://purl.obolibrary.org/obo/OBI_0000912 New values: Molecular entity|material|http://purl.obolibrary.org/obo/CHEBI_23367 Molecular structure|information content entity|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Chemical.owl#CHEBI_24431 X-ray crystallography assay|process|http://purl.obolibrary.org/obo/OBI_0000912 Life Science|domain| Taxonomy list has changed: Previous values: New values: All|http://identifiers.org/taxonomy/1?resource=MIR:00100019 Publication List has changed: Previous values: STAR/mmCIF: an ontology for macromolecular structure. New values: STAR/mmCIF: an ontology for macromolecular structure. Macromolecular Crystallographic Information File. Support links have changed: Previous values: New values: http://mmcif.wwpdb.org/docs/faqs/pdbx-mmcif-faq-general.html http://mmcif.wwpdb.org/docs/pdb_to_pdbx_correspondences.html Tools have changed: Previous values: New values: mmView Data processes have changed: Previous values: New values: Browse search
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Validated NMR structures of proteins and nucleic acids.
Chemical Component Dictionary
The Chemical Component Dictionary is an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.
Protein Data Bank in Europe
The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.
Protein Data Bank Japan
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. Tools are provided to search the PDB dictionary for chemical components, to identify structure entries containing particular small molecules, and to download the 3D structures of the small molecule components in the PDB entry.
RCSB Protein Data Bank
This resource is powered by the Protein Data Bank archive-information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data. The RCSB PDB builds upon the data by creating tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.
Nucleic Acids Database
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eCrystals is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service. It contains all the fundamental and derived data resulting from a single crystal X-ray structure determination, but excluding the raw images.
Biological Magnetic Resonance Databank
BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.
Electron Microscopy Data Bank
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB was founded at EBI in 2002, under the leadership of Kim Henrick. Since 2007 it has been operated jointly by the PDBe, and the Research Collaboratory for Structural Bioinformatics (RCSB PDB) as a part of EMDataBank which is funded by a joint NIH grant to PDBe, the RCSB and the National Center for Macromolecular Imaging (NCMI).
Worldwide Protein Data Bank
The Worldwide PDB (wwPDB) organization manages the PDB archive and ensures that the PDB is freely and publicly available to the global community. The mission of the wwPDB is to maintain a single Protein Data Bank Archive of macromolecular structural data that is freely and publicly available to the global community. The wwPDB is composed of the RCSB PDB, PDBe, PDBj and BMRB.
Protein Data Bank
Protein Data Bank is an archive of experimentally determined structures of proteins, nucleic acids, other biological macromolecules and their complexes with each other and with small molecules such as drugs.
Virus Particle Explorer
VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.
PDB-REDO is a databank of optimised (re-refined, rebuilt and validated) Protein Data Bank entries. It covers nearly all structure models derived from X-ray and electron diffraction that have deposited experimental data. Entries can be accessed by their PDB identifier.
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