GREENC
General Information
We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant species and six algae, resulting in the annotation of more than 120 000 lncRNAs. To facilitate the study of lncRNAs for the plant research community, the information gathered is organised in the Green Non-Coding Database.
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FAIRsharing.org: GREENC; GREENC; DOI: https://doi.org/10.25504/FAIRsharing.fe9kyy;
Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Oct 22 2019 9:29 a.m.
Record added: Nov. 19, 2015, 12:18 p.m.
Record updated:
Dec. 15, 2016, 9:29 a.m. by The FAIRsharing Team.
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Edits to 'https://fairsharing.org/FAIRsharing.fe9kyy' by 'The FAIRsharing Team' at 09:29, 15 Dec 2016 (approved):
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Before: Long non-coding RNAs (lncRNAs) are functional non-translated molecules greater than 200 nt. Their roles are diverse and they are usually involved in transcriptional regulation. LncRNAs still remain largely uninvestigated in plants with few exceptions. Experimentally validated plant lncRNAs have been shown to regulate important agronomic traits such as phosphate starvation response, flowering time and interaction with symbiotic organisms, making them of great interest in plant biology and in breeding. There is still a lack of lncRNAs in most sequenced plant species, and in those where they have been annotated, different methods have been used, so making the lncRNAs less useful in comparisons within and between species. We developed a pipeline to annotate lncRNAs and applied it to 37 plant species and six algae, resulting in the annotation of more than 120 000 lncRNAs. To facilitate the study of lncRNAs for the plant research community, the information gathered is organised in the Green Non-Coding Database (GreeNC, http://greenc.sciencedesigners.com/).
After: We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant species and six algae, resulting in the annotation of more than 120 000 lncRNAs. To facilitate the study of lncRNAs for the plant research community, the information gathered is organised in the Green Non-Coding Database. Domain list has changed: Previous values: Annotation|property| Genomics|| LNCRNA|| New values: Annotation|property| Genomics|| LNCRNA|| Life Science|domain| Publication List has changed: Previous values: GREENC: a Wiki-based database of plant lncRNAs New values: GREENC: a Wiki-based database of plant lncRNAs. Tools have changed: Previous values: New values: blast Support links have changed: Previous values: New values: http://greenc.sciencedesigners.com/wiki/Help http://greenc.sciencedesigners.com/wiki/Email Access points have changed: Previous values: New values: REST:http://greenc.sciencedesigners.com/api/ Data processes have changed: Previous values: New values: browse search Organisations have changed: Previous values: Sequentia Biotech SL New values: Sequentia Biotech SL|Spain Related databases have changed: Previous values: New values: biodbcore-000569: miRBase Sequence Database
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GREENC: a Wiki-based database of plant lncRNAs.
Paytuvi Gallart A,Hermoso Pulido A,Anzar Martinez de Lagran I,Sanseverino W,Aiese Cigliano R
Nucleic Acids Res 2015
View Paper (PubMed)
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