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SUPERFAMILY

General Information

SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes.

Homepage http://supfam.org

Countries that developed this resource United Kingdom

Created in 2000

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: SUPERFAMILY; SUPERFAMILY; DOI: https://doi.org/10.25504/FAIRsharing.frryvx; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Oct 19 2021 2:22 p.m.

Publication for citation The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver. Pandurangan AP,Stahlhacke J,Oates ME,Smithers B,Gough J; Nucleic Acids Res ; 2018; 10.1093/nar/gky1130;

This record is maintained by supfam

Record updated: April 20, 2021, 11:18 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.frryvx' by 'The FAIRsharing Team' at 11:18, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Attribution required||Data
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			SUPERFAMILY Attribution required|https://supfam.org/|Data
		Added:
			SUPERFAMILY Attribution required|https://supfam.org/|Data
		Removed:
			Attribution required||Data

	'onto_domains' has been modified:
		Before:
			Classification
			Hidden Markov model
			genome
			protein
			structure
		After:
			Classification
			Hidden Markov model
			Structure
			genome
			protein
			structure
		Added:
			Structure
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.frryvx' by 'The FAIRsharing Team' at 13:21, 03 Dec 2019 (approved):

	'organizations' has been modified:
		Before:
			Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			EU FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
		After:
			Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			EU FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
			MRC Laboratory of Molecular Biology (LMB), Cambridge, UK|http://www2.mrc-lmb.cam.ac.uk/|Maintains
			Department of Computer Science, University of Bristol, UK|http://www.bris.ac.uk/engineering/departments/computerscience/|Maintains
		Added:
			MRC Laboratory of Molecular Biology (LMB), Cambridge, UK|http://www2.mrc-lmb.cam.ac.uk/|Maintains
			Department of Computer Science, University of Bristol, UK|http://www.bris.ac.uk/engineering/departments/computerscience/|Maintains
		Removed:

	'supportLinks' has been modified:
		Before:
			TeSS training|https://tess.elixir-europe.org/materials/superfamily
			contact form|http://supfam.org/SUPERFAMILY/feedback.html
			help|http://supfam.org/SUPERFAMILY/sitemap.html#documentation
			twitter|@SUPERFAMILY
		After:
			TeSS training|https://tess.elixir-europe.org/materials/superfamily
			contact form|http://supfam.org/contact
			email|gough@mrc-lmb.cam.ac.uk
			online documentation|http://supfam.org/genome/stats
			twitter|@SUPERFAMILY
		Added:
			contact form|http://supfam.org/contact
			email|gough@mrc-lmb.cam.ac.uk
			online documentation|http://supfam.org/genome/stats
		Removed:
			contact form|http://supfam.org/SUPERFAMILY/feedback.html
			help|http://supfam.org/SUPERFAMILY/sitemap.html#documentation

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Functional Genomics
			Genomics
			Life Science
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			Functional Genomics
			Genomics
		Removed:

	'dataProcesses' has been modified:
		Before:
			Download
			Search
			Advanced search
		After:
			Search
			Browse SCOP hierarchy
			Browse Taxonomy hierarchy
		Added:
			Browse SCOP hierarchy
			Browse Taxonomy hierarchy
		Removed:
			Download
			Advanced search

	'contactEmail' has been modified:
		Before: gough@pasteur.fr
		After: apandura@mrc-lmb.cam.ac.uk

	'contact' has been modified:
		Before: Julian Gough
		After: 

	'publications' has been modified:
		Before:
			The SUPERFAMILY database in 2007: families and functions.|Wilson D., Madera M., Vogel C., Chothia C., Gough J., |Nucleic Acids Res.|2007
			SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.|Wilson D., Pethica R., Zhou Y., Talbot C., Vogel C., Madera M., Chothia C., Gough J., |Nucleic Acids Res.|2009
			SUPERFAMILY 1.75 including a domain-centric gene ontology method.|de Lima Morais DA., Fang H., Rackham OJ., Wilson D., Pethica R., Chothia C., Gough J., |Nucleic Acids Res.|2011
			Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.|Gough J,Karplus K,Hughey R,Chothia C|J Mol Biol|2001
		After:
			The SUPERFAMILY database in 2007: families and functions.|Wilson D., Madera M., Vogel C., Chothia C., Gough J., |Nucleic Acids Res.|2007
			SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.|Wilson D., Pethica R., Zhou Y., Talbot C., Vogel C., Madera M., Chothia C., Gough J., |Nucleic Acids Res.|2009
			SUPERFAMILY 1.75 including a domain-centric gene ontology method.|de Lima Morais DA., Fang H., Rackham OJ., Wilson D., Pethica R., Chothia C., Gough J., |Nucleic Acids Res.|2011
			Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.|Gough J,Karplus K,Hughey R,Chothia C|J Mol Biol|2001
			The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.|Pandurangan AP,Stahlhacke J,Oates ME,Smithers B,Gough J|Nucleic Acids Res|2018
		Added:
			The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.|Pandurangan AP,Stahlhacke J,Oates ME,Smithers B,Gough J|Nucleic Acids Res|2018
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.frryvx' by 'The FAIRsharing Team' at 18:37, 06 Aug 2018 (approved):

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.frryvx' by 'The FAIRsharing Team' at 13:29, 16 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Julian Gough
		Added:
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

contact form	Contact Form
support email	Julian Gough
online documentation	Statistics
twitter	@SUPERFAMILY

Additional Information

Contact

apandura@mrc-lmb.cam.ac.uk

TeSS training resources

Superfamily

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Search	http://supfam.org/sequence/search
Browse SCOP hierarchy	http://supfam.org/scop
Browse Taxonomy hierarchy	http://supfam.org/genome/hierarchy

Publications

The SUPERFAMILY database in 2007: families and functions.

Wilson D., Madera M., Vogel C., Chothia C., Gough J.,
Nucleic Acids Res. 2007