SUPERFAMILY
Homepage http://supfam.org
Countries that developed this resource United Kingdom
Created in 2000
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: SUPERFAMILY; SUPERFAMILY; DOI: https://doi.org/10.25504/FAIRsharing.frryvx; Last edited: Dec. 3, 2019, 1:22 p.m.; Last accessed: Jan 26 2021 3:39 a.m.
Publication for citation The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver. Pandurangan AP,Stahlhacke J,Oates ME,Smithers B,Gough J; Nucleic Acids Res ; 2018; 10.1093/nar/gky1130;
Record updated: Dec. 3, 2019, 1:21 p.m. by The FAIRsharing Team.
contact form | Contact Form |
support email | Julian Gough |
online documentation | Statistics |
@SUPERFAMILY |
Additional Information
Contact | apandura@mrc-lmb.cam.ac.uk |
TeSS training resources
Conditions of Use
Applies to: Data use- Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
- Attribution required
Data Access
Search | http://supfam.org/sequence/search |
Browse SCOP hierarchy | http://supfam.org/scop |
Browse Taxonomy hierarchy | http://supfam.org/genome/hierarchy |
The SUPERFAMILY database in 2007: families and functions.
Wilson D., Madera M., Vogel C., Chothia C., Gough J.,
Nucleic Acids Res. 2007
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.
Wilson D., Pethica R., Zhou Y., Talbot C., Vogel C., Madera M., Chothia C., Gough J.,
Nucleic Acids Res. 2009
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
de Lima Morais DA., Fang H., Rackham OJ., Wilson D., Pethica R., Chothia C., Gough J.,
Nucleic Acids Res. 2011
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
Gough J,Karplus K,Hughey R,Chothia C
J Mol Biol 2001
The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.
Pandurangan AP,Stahlhacke J,Oates ME,Smithers B,Gough J
Nucleic Acids Res 2018
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
This record is not implemented by any policy.
Record Maintainer
This record is maintained by supfam
Funds
Medical Research Council (MRC), London, UK (Government body)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
EU FP7 (Government body)
Maintains
MRC Laboratory of Molecular Biology (LMB), Cambridge, UK (Government body) Lead
Department of Computer Science, University of Bristol, UK (University) Lead
Grant Number(s)
213037 (EU FP7)
G022771 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)