Record updated: June 4, 2020, 8:36 a.m. by disgenet.

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 08:36, 04 Jun 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
			COVID-19
		After:
			COVID-19
			Interoperability
		Added:
			Interoperability
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 20:23, 03 Jun 2020 (approved):

	'tools' has been modified:
		Before:
			browse|3.0|http://www.disgenet.org
			Faceted Browser||http://rdf.disgenet.org/fct/
			DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
			disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
		After:
			browse||http://www.disgenet.org
			Faceted Browser||http://rdf.disgenet.org/fct/
			DisGeNET Cytoscape App|7.0|https://apps.cytoscape.org/apps/disgenetapp
			disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
		Added:
			browse||http://www.disgenet.org
			DisGeNET Cytoscape App|7.0|https://apps.cytoscape.org/apps/disgenetapp
		Removed:
			browse|3.0|http://www.disgenet.org
			DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 20:22, 03 Jun 2020 (approved):

	'description' has been modified:
		Before: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v 6.0) contains 628,685 gene-disease associations (GDAs), between 17,549 genes and 24,166 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 210,498 variant-disease associations (VDAs), between 117,337 variants and 10,358 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package. 
		After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package. 

	'publications' has been modified:
		Before:
			DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
			Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
			DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
			DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
		After:
			DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
			Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
			DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
			DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
			The DisGeNET knowledge platform for disease genomics: 2019 update.|Pinero J,Ramirez-Anguita JM,Sauch-Pitarch J,Ronzano F,Centeno E,Sanz F,Furlong LI|Nucleic Acids Res|2019
		Added:
			The DisGeNET knowledge platform for disease genomics: 2019 update.|Pinero J,Ramirez-Anguita JM,Sauch-Pitarch J,Ronzano F,Centeno E,Sanz F,Furlong LI|Nucleic Acids Res|2019
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'The FAIRsharing Team' at 14:27, 08 Apr 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			COVID-19
		Added:
			COVID-19
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 17:11, 04 Jun 2019 (approved):

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.disgenet.org/web/DisGeNET/menu/help
			contact form|http://www.disgenet.org/ds/DisGeNET/html/contact.html
			help|http://www.disgenet.org/web/DisGeNET/menu/help
			online documentation|http://disgenet.org/web/DisGeNET/menu/help
			twitter|@DisGeNET
		After:
			FAQ|http://www.disgenet.org/help
			email|support@disgenet.org
			online documentation|http://www.disgenet.org/dbinfo
			twitter|@DisGeNET
		Added:
			FAQ|http://www.disgenet.org/help
			email|support@disgenet.org
			online documentation|http://www.disgenet.org/dbinfo
		Removed:
			FAQ|http://www.disgenet.org/web/DisGeNET/menu/help
			contact form|http://www.disgenet.org/ds/DisGeNET/html/contact.html
			help|http://www.disgenet.org/web/DisGeNET/menu/help
			online documentation|http://disgenet.org/web/DisGeNET/menu/help

	'name' has been modified:
		Before: DisGeNET: a database of gene-disease associations
		After: DisGeNET: a knowledge base  for disease genomics

	'licences' has been modified:
		Before:
			Disgenet Open Database License|http://www.disgenet.org/ds/DisGeNET/html/legal.html|Data
			GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Software
		After:
			Disgenet Open Database License|http://www.disgenet.org/legal|Data
			GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Software
		Added:
			Disgenet Open Database License|http://www.disgenet.org/legal|Data
		Removed:
			Disgenet Open Database License|http://www.disgenet.org/ds/DisGeNET/html/legal.html|Data

	'dataProcesses' has been modified:
		Before:
			Download
		After:
		Added:
		Removed:
			Download

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
			Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
			DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
		After:
			DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
			Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
			DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
			DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
		Added:
			DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
		Removed:

	'tools' has been modified:
		Before:
			browse|3.0|http://www.disgenet.org
			Faceted Browser||http://rdf.disgenet.org/fct/
			DisGeNET Cytoscape plugin|3.0|http://www.disgenet.org/ds/DisGeNET/files/current/DisGeNET.jar
			disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
			Cytoscape App|1.0|http://apps.cytoscape.org/apps/disgenetapp
		After:
			browse|3.0|http://www.disgenet.org
			Faceted Browser||http://rdf.disgenet.org/fct/
			DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
			disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
		Added:
			DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
		Removed:
			DisGeNET Cytoscape plugin|3.0|http://www.disgenet.org/ds/DisGeNET/files/current/DisGeNET.jar
			Cytoscape App|1.0|http://apps.cytoscape.org/apps/disgenetapp

	'description' has been modified:
		Before: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package. 
		After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v 6.0) contains 628,685 gene-disease associations (GDAs), between 17,549 genes and 24,166 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 210,498 variant-disease associations (VDAs), between 117,337 variants and 10,358 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package. 

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 12:59, 13 Oct 2016 (approved):

	'year' has been modified:
		Before: 2010
		After: 2009 Domain list has changed:  Previous values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| human genetics database|None| New values:  Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| Biological databases|| Genome variation|process| human genetics database|None| Human mutations||

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 10:13, 11 Oct 2016 (approved):

	'description' has been modified:
		Before: DisGeNET is a discovery platform containing one of the largest collections of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package. 
		After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package.  Domain list has changed:  Previous values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| New values:  Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| human genetics database|None| Tools have changed:  Previous values: browse Faceted Browser DisGeNET Cytoscape plugin New values:  browse Faceted Browser DisGeNET Cytoscape plugin disgenet2r Cytoscape App There was a failure to add databases to this database. Offending items: OMIM

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 09:44, 11 Oct 2016 (approved):

	'description' has been modified:
		Before: DisGeNET is  comprehensive discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases. It integrates gene-disease associations from several public, expert, curated data sources (CTD, Uniprot, ClinVar), predictions from animal model databases, and text mining derived associations. 
		After: DisGeNET is a discovery platform containing one of the largest collections of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package. 

            

Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'The FAIRsharing Team' at 22:04, 07 Sep 2016 (approved):

	'year' has been modified:
		Before: None
		After: 2010