Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 08:36, 04 Jun 2020 (approved):
'user_defined_tags' has been modified:
Before:
COVID-19
After:
COVID-19
Interoperability
Added:
Interoperability
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 20:23, 03 Jun 2020 (approved):
'tools' has been modified:
Before:
browse|3.0|http://www.disgenet.org
Faceted Browser||http://rdf.disgenet.org/fct/
DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
After:
browse||http://www.disgenet.org
Faceted Browser||http://rdf.disgenet.org/fct/
DisGeNET Cytoscape App|7.0|https://apps.cytoscape.org/apps/disgenetapp
disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
Added:
browse||http://www.disgenet.org
DisGeNET Cytoscape App|7.0|https://apps.cytoscape.org/apps/disgenetapp
Removed:
browse|3.0|http://www.disgenet.org
DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 20:22, 03 Jun 2020 (approved):
'description' has been modified:
Before: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v 6.0) contains 628,685 gene-disease associations (GDAs), between 17,549 genes and 24,166 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 210,498 variant-disease associations (VDAs), between 117,337 variants and 10,358 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
'publications' has been modified:
Before:
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
After:
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
The DisGeNET knowledge platform for disease genomics: 2019 update.|Pinero J,Ramirez-Anguita JM,Sauch-Pitarch J,Ronzano F,Centeno E,Sanz F,Furlong LI|Nucleic Acids Res|2019
Added:
The DisGeNET knowledge platform for disease genomics: 2019 update.|Pinero J,Ramirez-Anguita JM,Sauch-Pitarch J,Ronzano F,Centeno E,Sanz F,Furlong LI|Nucleic Acids Res|2019
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'The FAIRsharing Team' at 14:27, 08 Apr 2020 (approved):
'user_defined_tags' has been modified:
Before:
After:
COVID-19
Added:
COVID-19
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 17:11, 04 Jun 2019 (approved):
'supportLinks' has been modified:
Before:
FAQ|http://www.disgenet.org/web/DisGeNET/menu/help
contact form|http://www.disgenet.org/ds/DisGeNET/html/contact.html
help|http://www.disgenet.org/web/DisGeNET/menu/help
online documentation|http://disgenet.org/web/DisGeNET/menu/help
twitter|@DisGeNET
After:
FAQ|http://www.disgenet.org/help
email|support@disgenet.org
online documentation|http://www.disgenet.org/dbinfo
twitter|@DisGeNET
Added:
FAQ|http://www.disgenet.org/help
email|support@disgenet.org
online documentation|http://www.disgenet.org/dbinfo
Removed:
FAQ|http://www.disgenet.org/web/DisGeNET/menu/help
contact form|http://www.disgenet.org/ds/DisGeNET/html/contact.html
help|http://www.disgenet.org/web/DisGeNET/menu/help
online documentation|http://disgenet.org/web/DisGeNET/menu/help
'name' has been modified:
Before: DisGeNET: a database of gene-disease associations
After: DisGeNET: a knowledge base for disease genomics
'licences' has been modified:
Before:
Disgenet Open Database License|http://www.disgenet.org/ds/DisGeNET/html/legal.html|Data
GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Software
After:
Disgenet Open Database License|http://www.disgenet.org/legal|Data
GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Software
Added:
Disgenet Open Database License|http://www.disgenet.org/legal|Data
Removed:
Disgenet Open Database License|http://www.disgenet.org/ds/DisGeNET/html/legal.html|Data
'dataProcesses' has been modified:
Before:
Download
After:
Added:
Removed:
Download
'miriam_id' has been modified:
Before: None
After:
'publications' has been modified:
Before:
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
After:
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze genedisease networks|Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI.|Bioinformatics.|2010
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases|Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI.|PLoS One|2011
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes|Piero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI|Database|2015
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
Added:
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants |Piero J, Bravo , Queralt-Rosinach N, Gutirrez-Sacristn A, Deu-Pons J, Centeno E, Garca-Garca J, Sanz F, Furlong LI.|Nucleic Acid Research|2017
Removed:
'tools' has been modified:
Before:
browse|3.0|http://www.disgenet.org
Faceted Browser||http://rdf.disgenet.org/fct/
DisGeNET Cytoscape plugin|3.0|http://www.disgenet.org/ds/DisGeNET/files/current/DisGeNET.jar
disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
Cytoscape App|1.0|http://apps.cytoscape.org/apps/disgenetapp
After:
browse|3.0|http://www.disgenet.org
Faceted Browser||http://rdf.disgenet.org/fct/
DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
disgenet2r|0.99.0|https://bitbucket.org/ibi_group/disgenet2r
Added:
DisGeNET Cytoscape App|6.0|https://apps.cytoscape.org/apps/disgenetapp
Removed:
DisGeNET Cytoscape plugin|3.0|http://www.disgenet.org/ds/DisGeNET/files/current/DisGeNET.jar
Cytoscape App|1.0|http://apps.cytoscape.org/apps/disgenetapp
'description' has been modified:
Before: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package.
After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v 6.0) contains 628,685 gene-disease associations (GDAs), between 17,549 genes and 24,166 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 210,498 variant-disease associations (VDAs), between 117,337 variants and 10,358 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 12:59, 13 Oct 2016 (approved):
'year' has been modified:
Before: 2010
After: 2009 Domain list has changed: Previous values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| human genetics database|None| New values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| Biological databases|| Genome variation|process| human genetics database|None| Human mutations||
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 10:13, 11 Oct 2016 (approved):
'description' has been modified:
Before: DisGeNET is a discovery platform containing one of the largest collections of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package.
After: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package. Domain list has changed: Previous values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| New values: Biomedical Science|None| Disease|information content entity|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11013 Gene|property|http://purl.org/obo/owl/SO#SO_0000704 Life Science|domain| human genetics database|None| Tools have changed: Previous values: browse Faceted Browser DisGeNET Cytoscape plugin New values: browse Faceted Browser DisGeNET Cytoscape plugin disgenet2r Cytoscape App There was a failure to add databases to this database. Offending items: OMIM
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'disgenet' at 09:44, 11 Oct 2016 (approved):
'description' has been modified:
Before: DisGeNET is comprehensive discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases. It integrates gene-disease associations from several public, expert, curated data sources (CTD, Uniprot, ClinVar), predictions from animal model databases, and text mining derived associations.
After: DisGeNET is a discovery platform containing one of the largest collections of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package.
Edits to 'https://fairsharing.org/FAIRsharing.fssydn' by 'The FAIRsharing Team' at 22:04, 07 Sep 2016 (approved):
'year' has been modified:
Before: None
After: 2010