Gene3D
Homepage http://gene3d.biochem.ucl.ac.uk
Developed in United Kingdom
Created in 2003
Taxonomic range
Knowledge Domains BETA
Subjects BETA
How to cite this record FAIRsharing.org: Gene3D; Gene3D; DOI: https://doi.org/10.25504/FAIRsharing.fyqk5z; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Feb 24 2019 2:41 a.m.
Publication for citation Gene3D: Extensive prediction of globular domains in proteins. Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J; Nucleic Acids Res ; 2017; 10.1093/nar/gkx1069;
Record updated: Nov. 21, 2018, 10:01 a.m. by The FAIRsharing Team.
support email | Gene3D.Contact@gmail.com |
help | http://gene3d.biochem.ucl.ac.uk/examples |
Additional Information
Contact | Corin Yeats |
TeSS training resources
Genome comparison | http://gene3d.biochem.ucl.ac.uk/compare?mode=genomes |
MODELLER | https://salilab.org/modeller/ |
Conditions of Use
Data Versioning
Version numbers are updated on a CATH release. Point updates are made when sequence sets are updated. | No link recorded |
Data Release
Protein Search | http://gene3d.biochem.ucl.ac.uk/searchForm?mode=protein |
Data Curation
automated curation | No link recorded |
Data Access
Family Search | http://gene3d.biochem.ucl.ac.uk/searchForm?mode=family |
download | http://download.cathdb.info/gene3d/CURRENT_RELEASE/ |
search | No link recorded |
CATH Search Sequence scanning | http://www.cathdb.info/search/by_sequence |
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.
Yeats C., Lees J., Carter P., Sillitoe I., Orengo C.,
Nucleic Acids Res. 2011
Gene3D: merging structure and function for a Thousand genomes.
Lees J., Yeats C., Redfern O., Clegg A., Orengo C.,
Nucleic Acids Res. 2010
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Das S,Lee D,Sillitoe I,Dawson NL,Lees JG,Orengo CA
Bioinformatics 2015
Gene3D: Extensive prediction of globular domains in proteins.
Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J
Nucleic Acids Res 2017
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- IntAct molecular interaction database
- Pfam
- ProtoNet
- Statistical Torsional Angles Potentials of NMR Refinement Database
- Plant Transcription Factor Database
- DrugBank
- Integrated resource of protein families, domains and functional sites
- Ensembl
- UniProt Knowledgebase
- CATH Protein Structure Classification
- MobiDB
- Genome3D
- TargetMine
This record is not implemented by any policy.
Record Maintainer
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Funds
U.S. National Library of Medicine (Government body)
European Commission (Government body)
Wellcome Trust, UK (Charitable foundation)
The Wellcome Trust, UK (Charitable foundation)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
University College London, UK (University)
Grant Number(s)
081989/Z/07/Z (The Wellcome Trust, UK)
DE-AC02-065CH11357 (National Institutes of Health (NIH), Bethesda, MD, USA)
HHSN272200700058C (National Institutes of Health (NIH), Bethesda, MD, USA)
LSHG-CT-2003-503265 (European Commission)
LSHG-CT-2004-512092 (European Commission)
LSHG-CT-2005-518254 (European Commission)
LSHG-CT-2005-518254 (European Commission)