databases > DOI:10.25504/FAIRsharing.fyqk5z

ready Gene3D

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Gene3D takes CATH domain families (from PDB structures) and assigns them to the millions protein sequences (using Hidden Markov models generated from HMMER) with no PDB structures.




How to cite this record FAIRsharing.org: Gene3D; Gene3D; DOI: https://doi.org/10.25504/FAIRsharing.fyqk5z; Last edited: Aug. 20, 2018, 4:42 p.m.; Last accessed: Oct 20 2018 1:20 p.m.

How to cite this resource  Gene3D: Extensive prediction of globular domains in proteins. Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J; Nucleic Acids Res ; 2017; 10.1093/nar/gkx1069;


Record updated: Aug. 13, 2018, 5:25 p.m. by The FAIRsharing Team.

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The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.

Yeats C., Lees J., Carter P., Sillitoe I., Orengo C.,
Nucleic Acids Res. 2011

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Gene3D: merging structure and function for a Thousand genomes.

Lees J., Yeats C., Redfern O., Clegg A., Orengo C.,
Nucleic Acids Res. 2010

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Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Das S,Lee D,Sillitoe I,Dawson NL,Lees JG,Orengo CA
Bioinformatics 2015

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Gene3D: Extensive prediction of globular domains in proteins.

Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

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  • 081989/Z/07/Z (The Wellcome Trust)

  • DE-AC02-065CH11357 (National Institutes of Health)

  • HHSN272200700058C (National Institutes of Health)

  • LSHG-CT-2003-503265 (European Commission)

  • LSHG-CT-2004-512092 (European Commission)

  • LSHG-CT-2005-518254 (European Commission)

  • LSHG-CT-2005-518254 (European Commission)