databases > DOI:10.25504/FAIRsharing.fyqk5z

ready Gene3D

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Gene3D uses the information in CATH to predict the locations of structural domains on millions of protein sequences available in public databases. Sequence data from UniProtKB and Ensembl for domains with no experimentally determined structures are scanned against CATH HMMs to predict domain sequence boundaries and make homologous superfamily assignments.




How to cite this record FAIRsharing.org: Gene3D; Gene3D; DOI: https://doi.org/10.25504/FAIRsharing.fyqk5z; Last edited: March 7, 2021, 8:42 p.m.; Last accessed: Jun 16 2021 8:03 a.m.

Publication for citation  Gene3D: Extensive prediction of globular domains in proteins. Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J; Nucleic Acids Res ; 2017; 10.1093/nar/gkx1069;


Record updated: March 7, 2021, 8:42 p.m. by The FAIRsharing Team.

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The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.

Yeats C., Lees J., Carter P., Sillitoe I., Orengo C.,
Nucleic Acids Res. 2011

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Gene3D: merging structure and function for a Thousand genomes.

Lees J., Yeats C., Redfern O., Clegg A., Orengo C.,
Nucleic Acids Res. 2010

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Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Das S,Lee D,Sillitoe I,Dawson NL,Lees JG,Orengo CA
Bioinformatics 2015

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Gene3D: Extensive prediction of globular domains in proteins.

Lewis TE,Sillitoe I,Dawson N,Lam SD,Clarke T,Lee D,Orengo C,Lees J
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

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  • 081989/Z/07/Z (The Wellcome Trust, UK)

  • DE-AC02-065CH11357 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • HHSN272200700058C (National Institutes of Health (NIH), Bethesda, MD, USA)

  • LSHG-CT-2003-503265 (European Commission)

  • LSHG-CT-2004-512092 (European Commission)

  • LSHG-CT-2005-518254 (European Commission)

  • LSHG-CT-2005-518254 (European Commission)