FAANG metadata experiment specification standard
Homepage https://github.com/FAANG/faang-metadata/blob/master/docs/faang_experiment_metadata.md
Countries that developed this resource European Union , United Kingdom , United States
Created in 2016
Taxonomic range
Knowledge Domains
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How to cite this record FAIRsharing.org: FAANG metadata experiment specification standard; FAANG metadata experiment specification standard; DOI: https://doi.org/10.25504/FAIRsharing.fztr98; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Mar 08 2021 9:36 a.m.
Record added: Aug. 19, 2016, 11:53 a.m.
Record updated:
Feb. 6, 2021, 11:06 a.m. by The FAIRsharing Team.
support email | General Contact |
support email | DCC General Contact |
Additional Information
Contact | Peter Harrison ORCID |
FAANG metadata validation tool | http://www.ebi.ac.uk/vg/faang |
No XSD schemas defined
Conditions of Use
Applies to: Data use Applies to: Database softwareData Release
Specification | https://github.com/FAANG/dcc-metadata/blob/master/docs/faang_experimen ... |
No publications available
Reporting Guidelines
Terminology Artifacts
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Identifier Schemas
No identifier schema standards defined
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No metrics standards defined
The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRIDE. It provides links to assays and specific samples, and accepts direct submissions of sample information.
ArrayExpress
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.
Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.
Sequence Read Archive
The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.
NCBI BioSample
The BioSample database stores submitter-supplied descriptive information, or metadata, about the biological materials used in experimental assays, from which data stored in NCBI’s primary data archives are derived.
This record is not implemented by any policy.
Record Maintainer
Funds
European Commission under FP7 Grant Agreement (Government body)
Maintains
Functional Annotation of Animal Genomes (FAANG) Administrators (Consortium) Lead
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute)