standards > terminology artifact > DOI:10.25504/FAIRsharing.g1qrqs


ready Planarian Anatomy and Developmental Stage Ontolgoy

Abbreviation: PLANA


General Information
Anatomy ontology for planaria and terms specific to the developmental stages of the planarian Schmidtea mediterranea. As the regenerative flatworm Schmidtea mediterranea gains popularity as a developmental research organism the need for standard nomenclature and a centralized repository of anatomical terms has become increasingly apparent. Utilization of a controlled vocabulary creates opportunities to catalogue genes and expression data for computational searches across research groups and cross-species comparisons, all while establishing a framework for integration of new terms. We created a Planarian Anatomy Ontology containing 327 terms and definitions for cellular organelles, cell types, tissues, organ systems, anatomical entities, life cycle stages and developmental processes described in the literature. Where possible, extant terms and definitions from Uberon and other open source anatomy ontologies were imported into the ontology to strengthen cross-species queries.

Homepage https://planosphere.stowers.org/anatomyontology

Developed in United States

Created in 2017

Taxonomic range




How to cite this record FAIRsharing.org: PLANA; Planarian Anatomy and Developmental Stage Ontolgoy; DOI: https://doi.org/10.25504/FAIRsharing.g1qrqs; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 17 2018 10:12 a.m.


Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: March 1, 2018, 9:25 p.m. by The FAIRsharing Team.

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In Collections
OBO Foundry


Support

General

support email Planosphere Helpdesk
online documentation GitHub Repository

Additional Information

Contact Sofia Robb

External Links

Bioportal http://bioportal.bioontology.org/ontologies/PLANA
OBO http://obofoundry.org/ontology/plana.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Molecular Fate Mapping Atlas (Browse Ontology) https://planosphere.stowers.org/atlas
Browse Ontology definitions https://planosphere.stowers.org/ontology



Publications

No publications available


PLANA Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (2)
Planosphere
Planosphere is a Schmidtea mediterranea molecular staging resource and atlas used for comparative studies of embryogenesis and regeneration.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.


Credit

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