CollecTF

General Information

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information.

Homepage http://collectf.umbc.edu

Countries that developed this resource United States

Created in 2013

Taxonomic range

Bacteria

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: CollecTF; CollecTF; DOI: https://doi.org/10.25504/FAIRsharing.g2cf4x; Last edited: Dec. 19, 2019, 3:58 p.m.; Last accessed: Jun 21 2021 5:28 a.m.

This record is maintained by sefakilic

Record updated: Dec. 19, 2019, 10:24 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.g2cf4x' by 'The FAIRsharing Team' at 10:24, 19 Dec 2019 (approved):

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-7280-7191

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Developmental Biology
			Life Science
			Transcriptomics
		Added:
			Developmental Biology
			Transcriptomics
		Removed:

	'dataProcesses' has been modified:
		Before:
			submit
			database release
			data curation
			search
			browse
		After:
			submit
			database release
			data curation
			search
			browse
			Register / Login
		Added:
			Register / Login
		Removed:

	'contactEmail' has been modified:
		Before: collectfdb@umbc.edu
		After: erill@umbc.edu

	'contact' has been modified:
		Before: Sefa Kilic
		After: Ivan Erill

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
			Transcription Factor
			experimentally_determined
			regulation of gene expression
		After:
			Protein Binding Domain
			Transcription Factor
			binding_site
			experimentally_determined
			regulation of gene expression
		Added:
			Protein Binding Domain
			binding_site
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

contact form	http://collectf.umbc.edu/browse/feedback ...
support email	collectfdb@umbc.edu

Additional Information

Contact

Ivan Erill ORCID

Tools

Motif Comparison

http://collectf.umbc.edu/browse/compare_motifs/

Access / Retrieve Data

Conditions of Use

Data Release

database release

http://collectf.umbc.edu/browse/release_history/

Data Curation

submit	http://collectf.umbc.edu/browse/contribute/
data curation	http://collectf.umbc.edu/browse/list_all_curations/
Register / Login	http://collectf.umbc.edu/accounts/register/

Data Access

search	http://collectf.umbc.edu/browse/search_motifs/
browse	http://collectf.umbc.edu/browse/browse/

Publications

CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria

Kilic, Sefa; White, Elliot; Sagitova, Dinara; Cornish, Joseph; Erill, Ivan
Nucleic Acids Research 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Evidence and Conclusion Ontology

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by sefakilic

Funds

National Science Foundation (NSF), USA (Government body)

Maintains

University of Maryland, Baltimore, MD, USA (University)

Grant Number(s)

MCB-1158056 (National Science Foundation (NSF), USA)

CollecTF

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