databases > DOI:10.25504/FAIRsharing.g3j5qj

ready Orthologous MAtrix

Abbreviation:OMA

General Information
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes. The distinctive features of OMA are its broad scope and size, high quality of inferences, feature-rich web interface, availability of data in a wide range of formats and interfaces, and frequent update schedule of two releases per year.

Homepage http://omabrowser.org/oma/about/

Developed in Switzerland

Created in 2007

Taxonomic range

Knowledge Domains  BETA





How to cite this record FAIRsharing.org: OMA; Orthologous MAtrix; DOI: https://doi.org/10.25504/FAIRsharing.g3j5qj; Last edited: Jan. 8, 2019, 1:24 p.m.; Last accessed: Feb 19 2019 3:08 a.m.


Record added: March 14, 2017, 2:34 p.m.
Record updated: Jan. 8, 2019, 1:24 p.m. by The FAIRsharing Team.



In Collections
ELIXIR Core Data and Data Deposition Resources

Support

General

FAQ http://omabrowser.org/oma/FAQ/
online documentation http://omabrowser.org/oma/type/

Additional Information

Contact Gaston Gonnet

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

download http://omabrowser.org/oma/archives/

Data Access

download http://omabrowser.org/oma/current/
export http://omabrowser.org/oma/export/

SOAP Web Services

OMA Browser SOAP API http://omabrowser.org/oma/APISOAP/

Other Web Services

OMA DAS API http://omabrowser.org/oma/APIDAS/


Publications

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

Altenhoff AM,Skunca N,Glover N,Train CM,Sueki A,Pilizota I,Gori K,Tomiczek B,Muller S,Redestig H,Gonnet GH,Dessimoz C
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

OMA 2011: orthology inference among 1000 complete genomes.

Altenhoff AM,Schneider A,Gonnet GH,Dessimoz C
Nucleic Acids Res 2010

View Paper (PubMed) View Publication

OMA Browser--exploring orthologous relations across 352 complete genomes.

Schneider A,Dessimoz C,Gonnet GH
Bioinformatics 2007

View Paper (PubMed) View Publication

Algorithm of OMA for large-scale orthology inference.

Roth AC,Gonnet GH,Dessimoz C
BMC Bioinformatics 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

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Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

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Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

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