databases > DOI:10.25504/FAIRsharing.g3j5qj
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ready Orthologous MAtrix

Abbreviation:OMA

General Information
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes. The distinctive features of OMA are its broad scope and size, high quality of inferences, feature-rich web interface, availability of data in a wide range of formats and interfaces, and frequent update schedule of two releases per year.

Homepage http://omabrowser.org/oma/about/

Countries that developed this resource Switzerland

Created in 2007

Taxonomic range

Knowledge Domains 

Subjects 





How to cite this record FAIRsharing.org: OMA; Orthologous MAtrix; DOI: https://doi.org/10.25504/FAIRsharing.g3j5qj; Last edited: Jan. 8, 2019, 1:24 p.m.; Last accessed: Sep 22 2020 2:39 a.m.


Record added: March 14, 2017, 2:34 p.m.
Record updated: Jan. 8, 2019, 1:24 p.m. by The FAIRsharing Team.



In Collections
EOSC-Life

Support

General

FAQ http://omabrowser.org/oma/FAQ/
online documentation http://omabrowser.org/oma/type/

Additional Information

Contact Gaston Gonnet

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

download http://omabrowser.org/oma/archives/

Data Access

download http://omabrowser.org/oma/current/
export http://omabrowser.org/oma/export/

SOAP Web Services

OMA Browser SOAP API http://omabrowser.org/oma/APISOAP/

Other Web Services

OMA DAS API http://omabrowser.org/oma/APIDAS/


Publications

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

Altenhoff AM,Skunca N,Glover N,Train CM,Sueki A,Pilizota I,Gori K,Tomiczek B,Muller S,Redestig H,Gonnet GH,Dessimoz C
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

OMA 2011: orthology inference among 1000 complete genomes.

Altenhoff AM,Schneider A,Gonnet GH,Dessimoz C
Nucleic Acids Res 2010

View Paper (PubMed) View Publication

OMA Browser--exploring orthologous relations across 352 complete genomes.

Schneider A,Dessimoz C,Gonnet GH
Bioinformatics 2007

View Paper (PubMed) View Publication

Algorithm of OMA for large-scale orthology inference.

Roth AC,Gonnet GH,Dessimoz C
BMC Bioinformatics 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

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Related Databases

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This record is not implemented by any policy.


Credit

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