PlasmoDB

Recommended

General Information

PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.

Homepage https://plasmodb.org

Countries that developed this resource United States

Created in 2008

Taxonomic range

Plasmodium

Knowledge Domains

In the following recommendations:

How to cite this record FAIRsharing.org: PlasmoDB; PlasmoDB; DOI: https://doi.org/10.25504/FAIRsharing.g4n8sw; Last edited: March 1, 2021, 4:23 p.m.; Last accessed: Mar 04 2021 6:46 p.m.

Publication for citation PlasmoDB: a functional genomic database for malaria parasites. Aurrecoechea C., Brestelli J., Brunk BP. et al.; Nucleic Acids Res. ; 2009; 10.1093/nar/gkn814;

Record updated: March 1, 2021, 4:16 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.g4n8sw' by 'The FAIRsharing Team' at 16:16, 01 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
		After:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
			National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Added:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
			National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Removed:
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds

	'related_databases' has been modified:
		Before:
			CryptoDB
			Eukaryotic Pathogen, Vector and Host Informatics Resource
			VectorBase
			Target Pathogen
		After:
			Fungal and Oomycete genomics resource
			CryptoDB
			Eukaryotic Pathogen, Vector and Host Informatics Resource
			GiardiaDB
			MicrosporidiaDB
			Toxoplasma Genomics Resource
			TrichDB
			TriTrypDB
			AmoebaDB
			VectorBase
			Target Pathogen
			ClinEpiDB
		Added:
			Fungal and Oomycete genomics resource
			GiardiaDB
			MicrosporidiaDB
			Toxoplasma Genomics Resource
			TrichDB
			TriTrypDB
			AmoebaDB
			ClinEpiDB
		Removed:

	'supportLinks' has been modified:
		Before:
			contact form|http://plasmodb.org/plasmo/contact.do
			help|http://plasmodb.org/plasmo/showXmlDataContent.do?name=XmlQuestions.Tutorials
			twitter|@EuPathDB
		After:
			contact form|https://plasmodb.org/plasmo/app/contact-us
			help|https://plasmodb.org/plasmo/app/static-content/landing.html
			online documentation|https://plasmodb.org/plasmo/app/search/organism/GenomeDataTypes/result
			twitter|@VEuPathDB
		Added:
			contact form|https://plasmodb.org/plasmo/app/contact-us
			help|https://plasmodb.org/plasmo/app/static-content/landing.html
			online documentation|https://plasmodb.org/plasmo/app/search/organism/GenomeDataTypes/result
			twitter|@VEuPathDB
		Removed:
			contact form|http://plasmodb.org/plasmo/contact.do
			help|http://plasmodb.org/plasmo/showXmlDataContent.do?name=XmlQuestions.Tutorials
			twitter|@EuPathDB

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		After:
			VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
		Added:
			VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
		Removed:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data

	'tools' has been modified:
		Before:
			BLAST||http://plasmodb.org/plasmo/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
		After:
		Added:
		Removed:
			BLAST||http://plasmodb.org/plasmo/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
		Added:
		Removed:
			Life Science

	'dataProcesses' has been modified:
		Before:
			Submit, data curation, http://plasmodb.org/EuPathDB_datasubm_SOP.pdf
			Download, data access, http://plasmodb.org/common/downloads/
		After:
			Submit, data curation, https://plasmodb.org/plasmo/app/static-content/dataSubmission.html
			Download, data release, https://plasmodb.org/plasmo/app/downloads/
			Search by Gene ID, data access, https://plasmodb.org/plasmo/app/search/transcript/GeneByLocusTag
		Added:
			Submit, data curation, https://plasmodb.org/plasmo/app/static-content/dataSubmission.html
			Download, data release, https://plasmodb.org/plasmo/app/downloads/
			Search by Gene ID, data access, https://plasmodb.org/plasmo/app/search/transcript/GeneByLocusTag
		Removed:
			Submit, data curation, http://plasmodb.org/EuPathDB_datasubm_SOP.pdf
			Download, data access, http://plasmodb.org/common/downloads/

	'grants' has been modified:
		Before:
			HHSN266200400037C
		After:
			212929/Z/18/Z
			218288/Z/19/Z
			HHSN266200400037C
		Added:
			212929/Z/18/Z
			218288/Z/19/Z
		Removed:

	'publications' has been modified:
		Before:
			PlasmoDB: a functional genomic database for malaria parasites.|Aurrecoechea C., Brestelli J., Brunk BP., Dommer J., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer E., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Stoeckert CJ., Treatman C., Wang H., |Nucleic Acids Res.|2009
		After:
			PlasmoDB: a functional genomic database for malaria parasites.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2009
		Added:
			PlasmoDB: a functional genomic database for malaria parasites.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2009
		Removed:
			PlasmoDB: a functional genomic database for malaria parasites.|Aurrecoechea C., Brestelli J., Brunk BP., Dommer J., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer E., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Stoeckert CJ., Treatman C., Wang H., |Nucleic Acids Res.|2009

	'accessPoints' has been modified:
		Before:
			Other|http://plasmodb.org/plasmo/serviceList.jsp|WADLs web services
		After:
			REST|https://plasmodb.org/plasmo/app/static-content/content/PlasmoDB/webServices.html|PlasmoDB Web Services Documentation
		Added:
			REST|https://plasmodb.org/plasmo/app/static-content/content/PlasmoDB/webServices.html|PlasmoDB Web Services Documentation
		Removed:
			Other|http://plasmodb.org/plasmo/serviceList.jsp|WADLs web services

	'homepage' has been modified:
		Before: http://PlasmoDB.org
		After: https://plasmodb.org

Edits to 'https://fairsharing.org/FAIRsharing.g4n8sw' by 'The FAIRsharing Team' at 17:59, 15 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Michael Gottlieb
		Added:
		Removed:

Support

General

contact form	Contact Form
help	How to Use
online documentation	Statistics
twitter	@VEuPathDB

Additional Information

Contact

Michael Gottlieb

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

VEuPathDB Data Submission and Release Policies

Data Release

Download

https://plasmodb.org/plasmo/app/downloads/

Data Curation

Submit

https://plasmodb.org/plasmo/app/static-content/dataSubmission.html

Data Access

Search by Gene ID

https://plasmodb.org/plasmo/app/search/transcript/GeneByLocusTag

REST Web Services

PlasmoDB Web Services Documentation

https://plasmodb.org/plasmo/app/static-content/content/PlasmoDB/webSer ...

Publications

PlasmoDB: a functional genomic database for malaria parasites.

Aurrecoechea C., Brestelli J., Brunk BP. et al.
Nucleic Acids Res. 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)

Maintains

Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body) Lead

Grant Number(s)

212929/Z/18/Z (The Wellcome Trust, UK)
218288/Z/19/Z (The Wellcome Trust, UK)
HHSN266200400037C (National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA)

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