databases > DOI:10.25504/FAIRsharing.g646hq

ready MetalPDB

General Information
MetalPDB is a resource aimed at conveying the information available on the three-dimensional structures of metal-binding biological macromolecules in a consistent and effective manner. This is achieved through the systematic and automated representation of metal-binding sites in proteins and nucleic acids by way of Minimal Functional Sites (MFSs). MFSs are three-dimensional templates that describe the local environment around the metal(s) independently of the larger context of the macromolecular structure embedding the site(s), and are the central objects of MetalPDB design. MFSs are grouped into equistructural (broadly defined as sites found in corresponding positions in similar structures) and equivalent sites (equistructural sites that contain the same metals), allowing users to easily analyze similarities and variations in metal-macromolecule interactions, and to link them to functional information.

Homepage http://metalweb.cerm.unifi.it/

Countries that developed this resource Italy

Created in 2012

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How to cite this record FAIRsharing.org: MetalPDB; MetalPDB; DOI: https://doi.org/10.25504/FAIRsharing.g646hq; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Nov 17 2019 7:46 p.m.


This record is maintained by andreiniclaudia  ORCID

Record updated: Dec. 5, 2016, 7:27 a.m. by The FAIRsharing Team.

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Support

General

help http://metalweb.cerm.unifi.it/help/gloss ...

Additional Information

Contact Claudia Andreini   ORCID


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Conditions of Use


Data Release

monthly release No link recorded

Data Access

Sequence search http://metalweb.cerm.unifi.it/search/sequence/
Metal search http://metalweb.cerm.unifi.it/search/metal/
Advanced search http://metalweb.cerm.unifi.it/search/advanced/
Download http://metalweb.cerm.unifi.it/download/first_sphere/



Publications

MetalPDB: a database of metal sites in biological macromolecular structures.

Andreini C,Cavallaro G,Lorenzini S,Rosato A
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

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Credit

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Grant Number(s)

  • 2009FAKHZT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)

  • RBFR08WGXT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)

  • RBRN07BMCT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)