databases > DOI:10.25504/FAIRsharing.g646hq

ready MetalPDB

General Information
MetalPDB is a resource aimed at conveying the information available on the three-dimensional structures of metal-binding biological macromolecules in a consistent and effective manner. This is achieved through the systematic and automated representation of metal-binding sites in proteins and nucleic acids by way of Minimal Functional Sites (MFSs). MFSs are three-dimensional templates that describe the local environment around the metal(s) independently of the larger context of the macromolecular structure embedding the site(s), and are the central objects of MetalPDB design. MFSs are grouped into equistructural (broadly defined as sites found in corresponding positions in similar structures) and equivalent sites (equistructural sites that contain the same metals), allowing users to easily analyze similarities and variations in metal-macromolecule interactions, and to link them to functional information.

Homepage http://metalweb.cerm.unifi.it/

Developed in Italy

Created in 2012

Taxonomic range

Subjects 





How to cite this record FAIRsharing.org: MetalPDB; MetalPDB; DOI: https://doi.org/10.25504/FAIRsharing.g646hq; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Apr 18 2019 5:20 p.m.


This record is maintained by andreiniclaudia  ORCID

Record updated: Dec. 5, 2016, 7:27 a.m. by The FAIRsharing Team.

Show edit history


Support

General

help http://metalweb.cerm.unifi.it/help/gloss ...

Additional Information

Contact Claudia Andreini   ORCID


Access / Retrieve Data

Conditions of Use


Data Release

monthly release No link recorded

Data Access

Sequence search http://metalweb.cerm.unifi.it/search/sequence/
Metal search http://metalweb.cerm.unifi.it/search/metal/
Advanced search http://metalweb.cerm.unifi.it/search/advanced/
Download http://metalweb.cerm.unifi.it/download/first_sphere/



Publications

MetalPDB: a database of metal sites in biological macromolecular structures.

Andreini C,Cavallaro G,Lorenzini S,Rosato A
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 2009FAKHZT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)

  • RBFR08WGXT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)

  • RBRN07BMCT (Ministero Italiano dell'Universita' e della Ricerca (MIUR), Roma, Italy)