standards > model/format > DOI:10.25504/FAIRsharing.h6c48k


ready KEGG Mark-up Language

Abbreviation: KGML


General Information
The KEGG Markup Language (KGML) is an exchange format of the KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG) format. KGML enables automatic drawing of KEGG pathways and provides facilities for computational analysis and modeling of gene/protein networks and chemical networks.

Homepage http://www.genome.jp/kegg/xml/

Developed in Germany , Japan

Taxonomic range




How to cite this record FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 15 2018 2:12 p.m.


Record updated: March 15, 2018, 10:13 a.m. by The FAIRsharing Team.

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In Collections
FAIRDOM Community Standards


Support

General

contact form http://www.genome.jp/feedback/

Additional Information

Contact Clemens Wrzodek

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use



REST Web Services

KEGG API http://www.kegg.jp/kegg/rest/keggapi.html


Publications

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats.

Wrzodek C,Drager A,Zell A
Bioinformatics 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined


Implementing Databases (1)
Integrated Pathway Analysis and Visualization System
iPAVS provides a collection of highly-structured manually curated human pathway data, it also integrates biological pathway information from several public databases and provides several tools to manipulate, filter, browse, search, analyze, visualize and compare the integrated pathway resources.

Implementing Policies

This record is not implemented by any policy.


Credit

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