standards > model/format > DOI:10.25504/FAIRsharing.h9g5pe


ready Protein Affinity Reagent eXtensible Markup Language

Abbreviation: PSI-PAR XML


General Information
The work on PSI-PAR was initiated as part of the ProteomeBinders project and carried out by EMBL-EBI and the PSI-MI work group. The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. For detailed information on all PSI activities, please see PSI Home Page. The PSI-PAR format is a standardized means of representing protein affinity reagent data and is designed to facilitate the exchange of information between different databases and/or LIMS systems. PSI-PAR is not a proposed database structure. The PSI-PAR format consists of the PSI-MI XML2.5 schema (originally designed for molecular interactions) and the PSI-PAR controlled vocabulary. In addition, PSI-PAR documentation and examples are available on this web page. The scope of PSI-PAR is PAR and target protein production and characterization.

Homepage http://www.psidev.info/index.php?q=node/281

Countries that developed this resource Denmark , France , Germany , Netherlands , Sweden , United Kingdom , United States

Created in 2008

Taxonomic range

Subjects 




How to cite this record FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Sep 22 2019 5:06 p.m.


Record updated: March 15, 2018, 11:52 a.m. by The FAIRsharing Team.

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Support

General

online documentation http://www.psidev.info/node/281

Additional Information

Contact par@psidev.info


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use


Data Access

download http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/mi/controlledV ...



Publications

A community standard format for the representation of protein affinity reagents.

Gloriam DE1, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, Hiltke T, Hoheisel JD, Kerrien S, Koegl M, Konthur Z, Korn B, Landegren U, Montecchi-Palazzi L, Palcy S, Rodriguez H, Schweinsberg S, Sievert V, Stoevesandt O, Taussig MJ, Ueffing M, Uhlén M, van der Maarel S, Wingren C, Woollard P, Sherman DJ, Hermjakob H.
Mol. Cell Proteomics 2010

View Paper (PubMed) View Publication

Related Standards

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
IntAct molecular interaction database
IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

Implementing Policies

This record is not implemented by any policy.


Credit

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Funds

Maintains

Grant Number(s)

  • 21211 (Cordis)

  • RI-CA 026008 (ProteomeBinders European Commission)