FAIRsharing is in read-only mode until September while we migrate our data to our new, improved system. In the meantime, please read our blog post or get in touch with us if you need to edit or add records, or have any questions.

Brainstem Connectome

Abbreviation:BC

General Information

Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Homepage https://neuroviisas.med.uni-rostock.de/connectome/index.php

Countries that developed this resource Germany

Created in 2019

Taxonomic range

Rattus rattus

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jul 28 2021 1:54 a.m.

Publication for citation neuroVIISAS: approaching multiscale simulation of the rat connectome. Schmitt O,Eipert P; Neuroinformatics ; 2012; 10.1007/s12021-012-9141-6;

This record is maintained by Schmitt

Record added: Oct. 24, 2019, 1:25 p.m.
Record updated: Dec. 12, 2019, 7:55 p.m. by Schmitt.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 19:55, 12 Dec 2019 (approved):

	'tools' has been modified:
		Before:
			neuroVIISAS|1.390|http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
			Jabref|3.6|http://www.jabref.org/
		After:
			neuroVIISAS|1.390|https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
			Jabref|3.6|http://www.jabref.org/
		Added:
			neuroVIISAS|1.390|https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
		Removed:
			neuroVIISAS|1.390|http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 19:51, 12 Dec 2019 (approved):

	'homepage' has been modified:
		Before: http://neuroviisas.med.uni-rostock.de/connectome/index.php
		After: https://neuroviisas.med.uni-rostock.de/connectome/index.php

	'description' has been modified:
		Before: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
		After: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 07:19, 03 Nov 2019 (approved):

	'dataProcesses' has been modified:
		Before:
			Search
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		After:
			Search connectome database
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Added:
			Search connectome database
		Removed:
			Search

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 07:17, 03 Nov 2019 (approved):

	'dataProcesses' has been modified:
		Before:
			Search
			Download Brainstem Rat Connectome
		After:
			Search
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Added:
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Removed:
			Download Brainstem Rat Connectome

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 06:15, 03 Nov 2019 (approved):

	'miriam_id' has been modified:
		Before: None
		After: 

	'description' has been modified:
		Before: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed research projects. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
		After: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 21:56, 01 Nov 2019 (approved):

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 21:55, 01 Nov 2019 (approved):

	'organizations' has been modified:
		Before:
		After:
			Department of Anatomy, University of Rostock, Rostock, Germany|https://anatomie.med.uni-rostock.de/|Maintains
		Added:
			Department of Anatomy, University of Rostock, Rostock, Germany|https://anatomie.med.uni-rostock.de/|Maintains
		Removed:

	'name' has been modified:
		Before: brainstem connectome
		After: Brainstem Connectome

	'onto_disciplines' has been modified:
		Before:
		After:
			Computational Neuroscience
			Neuroscience
			Systemic Neuroscience
			Systems Biology
		Added:
			Computational Neuroscience
			Neuroscience
			Systemic Neuroscience
			Systems Biology
		Removed:

	'dataProcesses' has been modified:
		Before:
			Web interface
		After:
			Search
			Download Brainstem Rat Connectome
		Added:
			Search
			Download Brainstem Rat Connectome
		Removed:
			Web interface

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
		After:
			Model organisms
			Network simulation
			brain
			modeling and simulation objective
			network model
			neuroimaging measurement
		Added:
			Model organisms
			Network simulation
			brain
			modeling and simulation objective
			network model
			neuroimaging measurement
		Removed:

	'homepage' has been modified:
		Before: http://neuroviisas.med.uni-rostock.de/
		After: http://neuroviisas.med.uni-rostock.de/connectome/index.php

	'description' has been modified:
		Before: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral.
		After: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed research projects. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 14:42, 24 Oct 2019 (approved):

	'doi' has been modified:
		Before: None
		After: 

	'miriam_id' has been modified:
		Before: 
		After: None

Support

General

support email

Dr. Oliver Schmitt

Additional Information

Contact

Schmitt ORCID

Tools

neuroVIISAS	https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml	1.390
Jabref	http://www.jabref.org/	3.6

Access / Retrieve Data

Conditions of Use

Data Release

Download complex brainstem data record (CDR)	https://neuroviisas.med.uni-rostock.de/bc.brain
Download straightforward brainstem data record (SDR)	https://neuroviisas.med.uni-rostock.de/bc.csv

Data Access

Search connectome database

https://neuroviisas.med.uni-rostock.de/connectome/index.php

Other Web Services

webStart.jnlp trough IcedTea Web Start

http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml

Publications

Towards Differential Connectomics with NeuroVIISAS.

Schwanke S,Jenssen J,Eipert P,Schmitt O
Neuroinformatics 2018