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Brainstem Connectome

Abbreviation:BC

General Information

Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Homepage https://neuroviisas.med.uni-rostock.de/connectome/index.php

Countries that developed this resource Germany

Created in 2019

Taxonomic range

Rattus rattus

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Oct 26 2021 3:54 p.m.

Publication for citation neuroVIISAS: approaching multiscale simulation of the rat connectome. Schmitt O,Eipert P; Neuroinformatics ; 2012; 10.1007/s12021-012-9141-6;

This record is maintained by Schmitt

Record added: Oct. 24, 2019, 1:25 p.m.
Record updated: Dec. 12, 2019, 7:55 p.m. by Schmitt.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 19:55, 12 Dec 2019 (approved):

	'tools' has been modified:
		Before:
			neuroVIISAS|1.390|http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
			Jabref|3.6|http://www.jabref.org/
		After:
			neuroVIISAS|1.390|https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
			Jabref|3.6|http://www.jabref.org/
		Added:
			neuroVIISAS|1.390|https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml
		Removed:
			neuroVIISAS|1.390|http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 19:51, 12 Dec 2019 (approved):

	'homepage' has been modified:
		Before: http://neuroviisas.med.uni-rostock.de/connectome/index.php
		After: https://neuroviisas.med.uni-rostock.de/connectome/index.php

	'description' has been modified:
		Before: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
		After: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 07:19, 03 Nov 2019 (approved):

	'dataProcesses' has been modified:
		Before:
			Search
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		After:
			Search connectome database
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Added:
			Search connectome database
		Removed:
			Search

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 07:17, 03 Nov 2019 (approved):

	'dataProcesses' has been modified:
		Before:
			Search
			Download Brainstem Rat Connectome
		After:
			Search
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Added:
			Download complex brainstem data record (CDR) 
			Download straightforward brainstem data record (SDR)
		Removed:
			Download Brainstem Rat Connectome

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'Schmitt' at 06:15, 03 Nov 2019 (approved):

	'miriam_id' has been modified:
		Before: None
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	'description' has been modified:
		Before: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed research projects. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
		After: Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 21:56, 01 Nov 2019 (approved):

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 21:55, 01 Nov 2019 (approved):

	'organizations' has been modified:
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			Department of Anatomy, University of Rostock, Rostock, Germany|https://anatomie.med.uni-rostock.de/|Maintains
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			Department of Anatomy, University of Rostock, Rostock, Germany|https://anatomie.med.uni-rostock.de/|Maintains
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		Before: brainstem connectome
		After: Brainstem Connectome

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			Computational Neuroscience
			Neuroscience
			Systemic Neuroscience
			Systems Biology
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			Computational Neuroscience
			Neuroscience
			Systemic Neuroscience
			Systems Biology
		Removed:

	'dataProcesses' has been modified:
		Before:
			Web interface
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			Search
			Download Brainstem Rat Connectome
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			Search
			Download Brainstem Rat Connectome
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			Web interface

	'miriam_id' has been modified:
		Before: None
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	'onto_domains' has been modified:
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			Model organisms
			Network simulation
			brain
			modeling and simulation objective
			network model
			neuroimaging measurement
		Added:
			Model organisms
			Network simulation
			brain
			modeling and simulation objective
			network model
			neuroimaging measurement
		Removed:

	'homepage' has been modified:
		Before: http://neuroviisas.med.uni-rostock.de/
		After: http://neuroviisas.med.uni-rostock.de/connectome/index.php

	'description' has been modified:
		Before: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral.
		After: Database of all know neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 
peer-reviewed research projects. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Edits to 'https://fairsharing.org/FAIRsharing.hD7sXQ' by 'The FAIRsharing Team' at 14:42, 24 Oct 2019 (approved):

	'doi' has been modified:
		Before: None
		After: 

	'miriam_id' has been modified:
		Before: 
		After: None

Support

General

support email

Dr. Oliver Schmitt

Additional Information

Contact

Schmitt ORCID

Tools

neuroVIISAS	https://neuroviisas.med.uni-rostock.de/neuroviisas.shtml	1.390
Jabref	http://www.jabref.org/	3.6

Access / Retrieve Data

Conditions of Use

Data Release

Download complex brainstem data record (CDR)	https://neuroviisas.med.uni-rostock.de/bc.brain
Download straightforward brainstem data record (SDR)	https://neuroviisas.med.uni-rostock.de/bc.csv

Data Access

Search connectome database

https://neuroviisas.med.uni-rostock.de/connectome/index.php

Other Web Services

webStart.jnlp trough IcedTea Web Start

http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml

Publications

Towards Differential Connectomics with NeuroVIISAS.

Schwanke S,Jenssen J,Eipert P,Schmitt O
Neuroinformatics 2018