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Genomic Expression Archive

Abbreviation:GEA

Recommended

General Information

Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.

Homepage https://www.ddbj.nig.ac.jp/gea

Countries that developed this resource Japan

Created in 2018

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

Scientific Data

How to cite this record FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Oct 17 2021 12:40 a.m.

Publication for citation DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data Yuichi Kodama, Jun Mashima, Takehide Kosuge and Osamu Ogasawara; Nucl. Acids Res. ; 2018; 10.1093/nar/gky1002;

This record is maintained by Bioinformation and DDBJ Center (ddbjcommon)

Record added: Jan. 18, 2019, 4:26 a.m.
Record updated: Jan. 21, 2019, 10:16 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.hESBcy' by 'The FAIRsharing Team' at 10:16, 21 Jan 2019 (approved):

	'onto_disciplines' has been modified:
		Before:
		After:
			Epigenetics
			Functional Genomics
			Life Sciences
		Added:
			Epigenetics
			Functional Genomics
			Life Sciences
		Removed:

	'standardsImplemented' has been modified:
		Before:
			MicroArray Gene Expression Tabular Format
		After:
			MicroArray Gene Expression Tabular Format
			Minimum Information About a Microarray Experiment
			Minimal Information about a high throughput SEQuencing Experiment
		Added:
			Minimum Information About a Microarray Experiment
			Minimal Information about a high throughput SEQuencing Experiment
		Removed:

	'supportLinks' has been modified:
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			FAQ|https://www.ddbj.nig.ac.jp/gea/faq-e.html
			contact form|https://www.ddbj.nig.ac.jp/contact-e.html
		Added:
			FAQ|https://www.ddbj.nig.ac.jp/gea/faq-e.html
			contact form|https://www.ddbj.nig.ac.jp/contact-e.html
		Removed:

	'dataProcesses' has been modified:
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			Data Submission Overview
			Data Download (FTP)
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			Data Submission Overview
			Data Download (FTP)
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	'onto_domains' has been modified:
		Before:
		After:
			DNA microarray
			Gene expression data
			SNP
			gene expression
			microarray assay
		Added:
			DNA microarray
			Gene expression data
			SNP
			gene expression
			microarray assay
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.hESBcy' by 'ddbjcommon' at 04:28, 18 Jan 2019 (approved):

	'publications' has been modified:
		Before:
		After:
			DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data|Yuichi Kodama, Jun Mashima, Takehide Kosuge and Osamu Ogasawara|Nucl. Acids Res.|2018
		Added:
			DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data|Yuichi Kodama, Jun Mashima, Takehide Kosuge and Osamu Ogasawara|Nucl. Acids Res.|2018
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

FAQ	GEA FAQ
contact form	Contact Form

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Release

Data Download (FTP)

ftp://ftp.ddbj.nig.ac.jp/ddbj_database/gea

Data Curation

Data Submission Overview

https://www.ddbj.nig.ac.jp/gea/overview-e.html

Publications

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data

Yuichi Kodama, Jun Mashima, Takehide Kosuge and Osamu Ogasawara
Nucl. Acids Res. 2018

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

No semantic standards defined

Models and Formats

MicroArray Gene Expression Tabular Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

ArrayExpress

Implementing Policies

Scientific Data Data Policy

Credit

Record Maintainer

This record is maintained by Bioinformation and DDBJ Center (ddbjcommon)

Maintains

Bioinformation and DDBJ Center (Research institute)

Genomic Expression Archive

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