Feature Annotation Location Description Ontology
Abbreviation: FALDO
Homepage http://biohackathon.org/resource/faldo
Countries that developed this resource Italy , Japan , Netherlands , Switzerland , United Kingdom , United States
Created in 2012
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Apr 10 2021 2:57 p.m.
Publication for citation FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. Bolleman JT,Mungall CJ,Strozzi F,Baran J,Dumontier M,Bonnal RJ,Buels R,Hoehndorf R,Fujisawa T,Katayama T,Cock PJ; J Biomed Semantics ; 2016; 10.1186/s13326-016-0067-z;
Record added: Jan. 16, 2017, 2:40 p.m.
Record updated:
Feb. 4, 2020, 2:13 p.m. by The FAIRsharing Team.
forum | FALDO Google Group |
online documentation | GitHub Issues at OBF Faldo |
online documentation | GitHub Project |
Additional Information
Contact | Jerven Bolleman |
External Links
Bioportal | http://bioportal.bioontology.org/ontologies/FALDO |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Access
AgroPortal: Browse / Download | http://agroportal.lirmm.fr/ontologies/FALDO |
Browse | http://biohackathon.org/resource/faldo |
Browse (AberOWL) | http://aber-owl.net/ontology/FALDO/#/ |
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
Bolleman JT,Mungall CJ,Strozzi F,Baran J,Dumontier M,Bonnal RJ,Buels R,Hoehndorf R,Fujisawa T,Katayama T,Cock PJ
J Biomed Semantics 2016
View in BioPortal.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Ensembl creates, integrates and distributes reference datasets and analysis tools that enable genomics. Ensembl is a genome browser that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotate genes, computes multiple alignments, predicts regulatory function and collects disease data.
UniProt Knowledgebase
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The UniProt Knowledgebase consists of two sections: a reviewed section containing manually-annotated records with information extracted from literature and curator-evaluated computational analysis (aka "UniProtKB/Swiss-Prot"), and an unreviewed section with computationally analyzed records that await full manual annotation (aka "UniProtKB/TrEMBL").
This record is not implemented by any policy.
Record Maintainer
This record is maintained by jerven
Maintains
Swiss Institute of Bioinformatics (SIB), Switzerland (Research institute) Lead