standards > model/format > DOI:10.25504/FAIRsharing.hbh5mk


ready Human Physiome Field Markup Language

Abbreviation: FieldML


General Information
FieldML is a declarative language for building hierarchical models represented by generalized mathematical fields. FieldML is developed as a data model and accompanying API. FieldML can be used to represent the dynamic 3D geometry and solution fields from computational models of cells, tissues and organs. It enables model interchange for the bioengineering and general engineering analysis communities. Example uses are models of tissue structure, the distribution of proteins and other biochemical compounds, anatomical annotation, and other biological annotation.



How to cite this record FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 15 2018 1:12 p.m.


Record updated: March 15, 2018, 11:45 a.m. by The FAIRsharing Team.

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Support

General

Additional Information


Tools

    No tools defined


Schemas
Download

Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

FieldML, a proposed open standard for the Physiome project for mathematical model representation.

Britten RD, Christie GR, Little C, Miller AK, Bradley C, Wu A, Yu T, Hunter P, Nielsen P.
Med Biol Eng Comput 2013

View Paper (PubMed) View Publication

FieldML: concepts and implementation

Christie GR, Nielsen PM, Blackett SA, Bradley CP, Hunter PJ.
Philos Trans A Math Phys Eng Sci. 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (1)
Physiome Model Repository
The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, providing version and access controlled repositories, called workspaces, for users to store their data. PMR also provides a mechanism to create persistent access to specific revisions of a workspace, termed exposures. Exposure plugins are available for specific types of data (e.g., CellML or FieldML documents) which enable customizable views of the data when browsing the repository via a web browser, or an application accessing the repository’s content via web services.

Implementing Policies

This record is not implemented by any policy.


Credit

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Funds

Maintains

Grant Number(s)

  • 224495 (European Community Seventh Framework Programme)