Ligand-Gated Ion Channel database

Abbreviation:LGICdb

General Information

This record was deprecated on Dec. 30, 2016 for the following reason(s): The database has been official frozen and no longer being actively maintained.

The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.

Homepage http://www.ebi.ac.uk/compneur-srv/LGICdb/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 1994

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: LGICdb; Ligand-Gated Ion Channel database; DOI: https://doi.org/10.25504/FAIRsharing.hjybww; Last edited: Feb. 11, 2020, 8:26 p.m.; Last accessed: Dec 05 2020 9:28 p.m.

Record updated: Feb. 11, 2020, 8:25 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.hjybww' by 'The FAIRsharing Team' at 20:25, 11 Feb 2020 (approved):

	'countries' has been modified:
		Before:
			European Union
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Removed:
			European Union

Edits to 'https://fairsharing.org/FAIRsharing.hjybww' by 'The FAIRsharing Team' at 11:14, 15 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			BBSRC Babraham Institute, Cambridge, UK|http://www.babraham.ac.uk|Maintains
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			BBSRC Babraham Institute, Cambridge, UK|http://www.babraham.ac.uk|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.hjybww' by 'The FAIRsharing Team' at 13:15, 30 Dec 2016 (approved):

	'status' has been modified:
		Before: Ready
		After: Deprecated

Edits to 'https://fairsharing.org/FAIRsharing.hjybww' by 'The FAIRsharing Team' at 21:59, 28 Sep 2016 (approved):

	'description' has been modified:
		Before: The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.
		After: The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.

Support

General

FAQ	http://www.ebi.ac.uk/compneur-srv/LGICdb ...

Additional Information

Contact

Nicolas Le Novere

Tools

BLAST

http://www.ebi.ac.uk/fasta/lgicp.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Access

Download	http://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb60.tar.gz
search	http://www.ebi.ac.uk/compneur-srv/lgic/dynamic/search.jsp

Publications

The Ligand Gated Ion Channel Database.

Le Novère N., Changeux JP.,
Nucleic Acids Res. 1999

View Paper (PubMed)

LGICdb: a manually curated sequence database after the genomes.

Donizelli M,Djite MA,Le Novere N
Nucleic Acids Res 2005

View Paper (PubMed) View Publication

LGICdb: the ligand-gated ion channel database.

Le Novere N,Changeux JP
Nucleic Acids Res 2000

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)

Maintains

BBSRC Babraham Institute, Cambridge, UK (Government body) Lead
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute)

Ligand-Gated Ion Channel database

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