PASS2
Homepage http://caps.ncbs.res.in/pass2/
Countries that developed this resource India
Created in 1998
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: PASS2; PASS2; DOI: https://doi.org/10.25504/FAIRsharing.htzwqf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Mar 06 2021 5:46 p.m.
Record updated: July 13, 2017, 2:04 p.m. by The FAIRsharing Team.
help | http://caps.ncbs.res.in/cgi-bin/pass2/he ... |
Additional Information
Contact | R. Sowdhamini |
Conditions of Use
Data Versioning
versioning by scop release and year of update. Access to historical files possible. | No link recorded |
Data Release
According to SCOP release | No link recorded |
Data Curation
automated curation | No link recorded |
manual curation | No link recorded |
Data Access
file download(tab-delimited) | No link recorded |
browse | http://caps.ncbs.res.in/cgi-bin/pass2/browse.py |
search | http://caps.ncbs.res.in/pass2/ |
CAMPASS: a database of structurally aligned protein superfamilies.
Sowdhamini R., Burke DF., Huang JF., Mizuguchi K., Nagarajaram HA., Srinivasan N., Steward RE., Blundell TL.,
Structure 1998
PASS2: an automated database of protein alignments organised as structural superfamilies.
Bhaduri A., Pugalenthi G., Sowdhamini R.,
BMC Bioinformatics 2004
PASS2: a semi-automated database of protein alignments organised as structural superfamilies.
Mallika V., Bhaduri A., Sowdhamini R.,
Nucleic Acids Res. 2002
JOY: protein sequence-structure representation and analysis.
Mizuguchi K., Deane CM., Blundell TL., Johnson MS., Overington JP.,
Bioinformatics 1998
Protein three-dimensional structural databases: domains, structurally aligned homologues and superfamilies.
Sowdhamini R., Burke DF., Deane C., Huang JF., Mizuguchi K., Nagarajaram HA., Overington JP., Srinivasan N., Steward RE., Blundell TL.,
Acta Crystallogr. D Biol. Crystallogr. 1998
Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming.
Sali A., Blundell TL.,
J. Mol. Biol. 1990
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
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Record Maintainer
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Funds
The Wellcome Trust, UK (Charitable foundation)
Department of Biotechnology, Ministry of Science and Technology, India (Government body)
Department of Biotechnology, Ministry of Science and Technology, India (Government body)
Maintains
Department of Biochemistry, University of Cambridge, Cambridge, UK (University)
National Center for Biological Sciences (NCBS), Bangalore, India (Research institute)
Department of Crystallography, Birkbeck College, University of London, London, England, UK (University)
Grant Number(s)
BT/01/COE/09/01 (Department of Biotechnology, Ministry of Science and Technology, India)