databases > DOI:10.25504/FAIRsharing.iHhPe9
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ready XenMine

General Information
XenMine has been created to view, search and analyze Xenopus data, and provides essential information on gene expression changes and regulatory elements present in the genome. It contains published genomic datasets from both Xenopus tropicalis and Xenopus laevis.

Homepage http://www.xenmine.org/xenmine

Countries that developed this resource United States

Created in 2017





How to cite this record FAIRsharing.org: XenMine; XenMine; DOI: https://doi.org/10.25504/FAIRsharing.iHhPe9; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Oct 26 2021 2:55 p.m.

Publication for citation  XenMine: A genomic interaction tool for the Xenopus community. Reid CD,Karra K,Chang J,Piskol R,Li Q,Li JB,Cherry JM,Baker JC; Dev Biol ; 2016; 10.1016/j.ydbio.2016.02.034;


This record is maintained by InterMineTeam

Record added: Dec. 12, 2018, 8:56 p.m.
Record updated: Sept. 20, 2019, 11:51 a.m. by The FAIRsharing Team.



In Collections
InterMine

Support

General

online documentation Data Categories

Additional Information

Contact jbaker@stanford.edu

TeSS training resources 

InterMine user tutorial

InterMine user manual



Tools
JBrowse (View ChIP-Seq tracks) http://www.xenmine.org/jbrowse/index.html?

Access / Retrieve Data

Conditions of Use

Applies to: Database software

Data Access

Search Via Pre-Defined Queries http://www.xenmine.org/xenmine/templates.do
Search Against A List http://www.xenmine.org/xenmine/bag.do
Advanced Search (Query Builder) http://www.xenmine.org/xenmine/customQuery.do
Search Within Genomic Regions http://www.xenmine.org/xenmine/genomicRegionSearch.do

REST Web Services

Web Service Client (Perl, Python, Ruby, Java) http://www.xenmine.org/xenmine/api.do


Publications

XenMine: A genomic interaction tool for the Xenopus community.

Reid CD,Karra K,Chang J,Piskol R,Li Q,Li JB,Cherry JM,Baker JC
Dev Biol 2016

View Paper (PubMed) View Publication

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Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

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Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 5R01HD076839 (National Human Genome Research Institute (NHGRI), NIH, United States)