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ready Statistical Torsional Angles Potentials of NMR Refinement Database

Abbreviation:STAP

General Information
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinements have been performed using statistical torsion angle potential and structurally- or experimentally- derived distance potential. The refined structures have a significantly improved structural quality compared to their initial NMR structure.

Homepage http://psb.kobic.re.kr/stap/refinement/

Countries that developed this resource South Korea

Created in 2011

Taxonomic range

Knowledge Domains 





How to cite this record FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Sep 21 2020 7:50 p.m.


Record updated: Sept. 26, 2016, 11:45 a.m. by The FAIRsharing Team.

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Support

General

support email webmaster@kobic.kr
help http://psb.kobic.re.kr/stap/refinement/h ...
online documentation http://psb.kobic.re.kr/stap/refinement/m ...

Additional Information

Contact Jinhyuk Lee

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Versioning

access to historical files available No link recorded

Data Release

ad-hoc release No link recorded

Data Curation

manual curation No link recorded

Data Access

file download(txt) No link recorded
SQL database dump No link recorded
search http://psb.kobic.re.kr/stap/refinement/index.cgi



Publications

STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures.

Yang JS,Kim JH,Oh S,Han G,Lee S,Lee J
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach.

Kim TR,Yang JS,Shin S,Lee J
Proteins 2013

View Paper (PubMed) View Publication

Protein NMR structures refined without NOE data.

Ryu H,Kim TR,Ahn S,Ji S,Lee J
PLoS One 2014

View Paper (PubMed) View Publication

NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores.

Ryu H,Lim G,Sung BH,Lee J
Bioinformatics 2015

View Paper (PubMed) View Publication

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Grant Number(s)

  • 20110002321 (Ministry of Science, ICT and Future Planning, Gwacheon, Korea)

  • 20110019747 (Ministry of Science, ICT and Future Planning, Gwacheon, Korea)