databases > DOI:10.25504/FAIRsharing.ja9cdq

ready Statistical Torsional Angles Potentials of NMR Refinement Database

Abbreviation:STAP

General Information
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinements have been performed using statistical torsion angle potential and structurally- or experimentally- derived distance potential. The refined structures have a significantly improved structural quality compared to their initial NMR structure.

Homepage http://psb.kobic.re.kr/stap/refinement/

Countries that developed this resource South Korea

Created in 2011

Taxonomic range

Knowledge Domains 





How to cite this record FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jul 16 2019 7:29 p.m.


Record updated: Sept. 26, 2016, 11:45 a.m. by The FAIRsharing Team.

Show edit history


Support

General

support email webmaster@kobic.kr
help http://psb.kobic.re.kr/stap/refinement/h ...
online documentation http://psb.kobic.re.kr/stap/refinement/m ...

Additional Information

Contact Jinhyuk Lee
Identifiers.org MIR:00000399

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Versioning

access to historical files available No link recorded

Data Release

ad-hoc release No link recorded

Data Curation

manual curation No link recorded

Data Access

file download(txt) No link recorded
SQL database dump No link recorded
search http://psb.kobic.re.kr/stap/refinement/index.cgi



Publications

STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures.

Yang JS,Kim JH,Oh S,Han G,Lee S,Lee J
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach.

Kim TR,Yang JS,Shin S,Lee J
Proteins 2013

View Paper (PubMed) View Publication

Protein NMR structures refined without NOE data.

Ryu H,Kim TR,Ahn S,Ji S,Lee J
PLoS One 2014

View Paper (PubMed) View Publication

NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores.

Ryu H,Lim G,Sung BH,Lee J
Bioinformatics 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • 20110002321 (Ministry of Science, ICT and Future Planning, Gwacheon, Korea)

  • 20110019747 (Ministry of Science, ICT and Future Planning, Gwacheon, Korea)