standards > terminology artifact > DOI:10.25504/FAIRsharing.jcg19w


ready Kinetic Simulation Algorithm Ontology

Abbreviation: KiSAO


General Information
The Kinetic Simulation Algorithm Ontology aims at providing support in unambiguously referring to simulation algorithms when describing a simulation experiment. It describes and classifies existing algorithms and their inter-relationships through the algorithm characteristics and parameters.

Homepage http://co.mbine.org/standards/kisao

Countries that developed this resource European Union

Created in 2015

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How to cite this record FAIRsharing.org: KiSAO; Kinetic Simulation Algorithm Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jcg19w; Last edited: Dec. 17, 2019, 5:19 p.m.; Last accessed: Dec 05 2020 11:03 p.m.


This record is maintained by lenov  ORCID

Record updated: Nov. 28, 2019, 3:53 p.m. by The FAIRsharing Team.

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Publications

Controlled vocabularies and semantics in systems biology.

Courtot M,Juty N,Knupfer C,Waltemath D,Zhukova A,Drager A,Dumontier M,Finney A,Golebiewski M,Hastings J,Hoops S,Keating S,Kell DB,Kerrien S,Lawson J,Lister A,Lu J,Machne R,Mendes P,Pocock M,Rodriguez N,Villeger A,Wilkinson DJ,Wimalaratne S,Laibe C,Hucka M,Le Novere N
Mol Syst Biol 2011

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KISAO Ontology Display

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Related Databases (3)
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

BioSimulators
BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (supported modeling frameworks, simulation algorithms, and modeling formats) needed for specific modeling projects.

BioSimulations
BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.

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