databases > DOI:10.25504/FAIRsharing.jnzrt

ready Project Tycho: Data for Health

Abbreviation:Project Tycho

General Information
In 2013, we released the first version of Project Tycho containing weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 3700 users have registered to use Project Tycho data for a total of 40 creative works including peer-reviewed research papers, visualizations, online applications, and newspaper articles. Project Tycho 2.0 has expanded its scope to a global level and improved standardization, following FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles where possible. Project Tycho 2.0 includes case counts for 28 additional notifiable conditions for the US and includes data for dengue-related conditions for 99 countries between 1955 and 2010, obtained from the World Health Organization and Ministries of Health. Project Tycho 2.0 datasets are represented in a standard format and include standard SNOMED-CT codes for reported conditions, ISO 3166 codes for countries and first administrative level subdivisions, and NCBI TaxonID numbers for pathogens. Metadata for Project Tycho datasets are available on the website in human-readable format, but also in machine-interpretable DATS and DataCite metadata files.

Homepage http://www.tycho.pitt.edu

Countries that developed this resource United States

Created in 2013

Taxonomic range





How to cite this record FAIRsharing.org: Project Tycho; Project Tycho: Data for Health; DOI: https://doi.org/10.25504/FAIRsharing.jnzrt; Last edited: Jan. 8, 2019, 1:25 p.m.; Last accessed: May 22 2019 7:55 p.m.


This record is maintained by wgvanpanhuis  ORCID

Record added: Aug. 18, 2017, 11:31 a.m.
Record updated: July 3, 2018, 11:54 a.m. by The FAIRsharing Team.

Show edit history


Support

General

contact form Contact Form

Additional Information

Contact Wilbert van Panhuis   ORCID

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

web interface https://www.tycho.pitt.edu/data/

REST Web Services

This API enables querying and downloading of Project Tycho variables, values, and data https://www.tycho.pitt.edu/dataset/api/


Publications

Contagious diseases in the United States from 1888 to the present.

van Panhuis WG,Grefenstette J,Jung SY,Chok NS,Cross A,Eng H,Lee BY,Zadorozhny V,Brown S,Cummings D,Burke DS
N Engl J Med 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 49276 (Bill and Melinda Gates Foundation, Seattle, Washington, USA)

  • 5K01ES026836-03 (National Institutes of Health Big Data to Knowledge Initiative (NIH, BD2K), Bethesda, MD, USA)

  • 5U54GM088491-09 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)