databases > DOI:10.25504/FAIRsharing.jrv6wj
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ready Xenopus laevis and tropicalis biology and genomics resource

Abbreviation:Xenbase

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General Information
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis which was created to improve knowledge of developmental and disease processes. Through curation and automated data provisioning from various sources, Xenbase aims to integrate the body of knowledge on Xenopus genomics and biology together with the visualization of biologically-significant interactions.




How to cite this record FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Sep 25 2021 12:39 p.m.


This record is maintained by xenbase

Record updated: March 3, 2021, 7:47 p.m. by The FAIRsharing Team.

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Publications

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

•JB Karpinka, JD Fortriede, KA Burns, C James-Zorn; VG Ponferrada; J Lee; K Karimi; AM Zorn; PD Vize
Nucleic Acids Res. 2014

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The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud

K Karimi and PD Vize
Database 2014

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Xenbase: gene expression and improved integration.

Bowes JB,Snyder KA,Segerdell E,Jarabek CJ,Azam K,Zorn AM,Vize PD
Nucleic Acids Res 2009

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Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Segerdell E,Ponferrada VG,James-Zorn C,Burns KA,Fortriede JD,Dahdul WM,Vize PD,Zorn AM
J Biomed Semantics 2013

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Xenopus genomic data and browser resources.

Vize PD,Zorn AM
Dev Biol 2016

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Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.

James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A.
Methods Mol Biol. 2018;1757:251-305. 2018

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Xenbase: Facilitating the Use of Xenopus to Model Human Disease.

Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, Zorn AM.
Front Physiol. 2019 Feb 26;10:154 2019

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Xenopus genomic data and browser resources.

Vize PD, Zorn AM.
Dev Biol. 2017 Jun 15;426(2):194-199. 2017

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Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.

Fortriede JD,Pells TJ,Chu S,Chaturvedi P,Wang D,Fisher ME,James-Zorn C,Wang Y,Nenni MJ,Burns KA,Lotay VS,Ponferrada VG,Karimi K,Zorn AM,Vize PD
Nucleic Acids Res 2019

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  • This record is maintained by xenbase

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Grant Number(s)

  • P41 HD064556 (The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), National Institutes of Health (NIH), Rockville, MD, USA)