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ready Xenopus laevis and tropicalis biology and genomics resource


General Information
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. It includes gene expression patterns that incorporate image data from the literature, large scale screens and community submissions.

How to cite this record Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI:; Last edited: April 17, 2019, 8:15 p.m.; Last accessed: Jul 08 2020 2:19 p.m.

This record is maintained by xenbase

Record updated: April 17, 2019, 7:45 p.m. by xenbase.

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Additional Information

Access / Retrieve Data

Conditions of Use

Applies to: General
  • No reuse without permision

Data Access


Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

•JB Karpinka, JD Fortriede, KA Burns, C James-Zorn; VG Ponferrada; J Lee; K Karimi; AM Zorn; PD Vize
Nucleic Acids Res. 2014

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The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud

K Karimi and PD Vize
Database 2014

View Paper (PubMed) View Publication

Xenbase: gene expression and improved integration.

Bowes JB,Snyder KA,Segerdell E,Jarabek CJ,Azam K,Zorn AM,Vize PD
Nucleic Acids Res 2009

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Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Segerdell E,Ponferrada VG,James-Zorn C,Burns KA,Fortriede JD,Dahdul WM,Vize PD,Zorn AM
J Biomed Semantics 2013

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Xenopus genomic data and browser resources.

Vize PD,Zorn AM
Dev Biol 2016

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Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.

James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A.
Methods Mol Biol. 2018;1757:251-305. 2018

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Xenbase: Facilitating the Use of Xenopus to Model Human Disease.

Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, Zorn AM.
Front Physiol. 2019 Feb 26;10:154 2019

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Xenopus genomic data and browser resources.

Vize PD, Zorn AM.
Dev Biol. 2017 Jun 15;426(2):194-199. 2017

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Record Maintainer

  • This record is maintained by xenbase



Grant Number(s)

  • P41 HD064556 (National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA)