standards > terminology artifact > DOI:10.25504/FAIRsharing.js20q3


ready Chickpea Ontology

Abbreviation: CO_338


General Information
Development of crop-specific trait ontologies including the Chickpea Ontology began in 2008 as part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.

Homepage http://www.cropontology.org/ontology/CO_338/Chickpea

Countries that developed this resource Worldwide

Created in 2015

Taxonomic range

Knowledge Domains 




How to cite this record FAIRsharing.org: CO_338; Chickpea Ontology; DOI: https://doi.org/10.25504/FAIRsharing.js20q3; Last edited: Jan. 30, 2020, 11:35 a.m.; Last accessed: Feb 23 2020 12:59 p.m.


Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Jan. 30, 2020, 11:35 a.m. by The FAIRsharing Team.

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Support

General

support email Crop Ontology Helpdesk
forum Crop Ontology Forum
help Video Tutorials

Additional Information

Contact Trushar Shah

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download OBO Format http://www.cropontology.org/obo/CO_338
Download RDF http://www.cropontology.org/ontology/CO_338/Chickpea/nt

Data Curation

Add new terms http://www.cropontology.org/add-ontology
Annotation tool http://www.cropontology.org/annotation-tool

Data Access

Browse http://www.cropontology.org/ontology/CO_338/Chickpea
AgroPortal: Browse / Download http://agroportal.lirmm.fr/ontologies/CO_338

REST Web Services

Crop Ontology API http://www.cropontology.org/api


Publications

No publications available



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (2)
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Implementing Policies

This record is not implemented by any policy.


Credit

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