US Department of Energy Systems Biology Knowledgebase
Abbreviation:KBase
General Information
KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.
How to cite this record
FAIRsharing.org: KBase; US Department of Energy Systems Biology Knowledgebase; DOI: https://doi.org/10.25504/FAIRsharing.jsxqrk;
Last edited: Aug. 14, 2020, 9:53 a.m.; Last accessed: Sep 23 2020 5:09 p.m.
Publication for citation
The DOE Systems Biology Knowledgebase (KBase)
View ORCID ProfileAdam P. Arkin, Rick L Stevens, Robert W Cottingham, Sergei Maslov, Christopher S Henry, Paramvir Dehal, Doreen Ware, Fernando Perez, Nomi L Harris et.al...; bioRxiv ;
2016;
doi.org/10.1101/096354;
Record added: Feb. 23, 2017, 11:05 a.m.
Record updated:
Aug. 11, 2020, 4:19 p.m. by kbaseoutreach.
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Edits to 'https://fairsharing.org/FAIRsharing.jsxqrk' by 'kbaseoutreach' at 16:19, 11 Aug 2020 (approved):
'licences' has been modified:
Before:
KBase Terms and Condition|https://kbase.us/terms-and-conditions/|Data
KBasePrivacy Policy|https://kbase.us/privacy-policy/|Data
After:
KBase Terms and Condition|https://www.kbase.us/terms-and-conditions/|Data
KBasePrivacy Policy|https://www.kbase.us/privacy-policy/|Data
Added:
KBase Terms and Condition|https://www.kbase.us/terms-and-conditions/|Data
KBasePrivacy Policy|https://www.kbase.us/privacy-policy/|Data
Removed:
KBase Terms and Condition|https://kbase.us/terms-and-conditions/|Data
KBasePrivacy Policy|https://kbase.us/privacy-policy/|Data
'supportLinks' has been modified:
Before:
FAQ|https://kbase.us/frequently-asked-questions/
forum|https://kbase.us/using-the-kbase-help-board/
online documentation|https://kbase.us/wp-content/uploads/2017/02/KBase-Brochure_1Feb2017.pdf
online documentation|http://worldcomp-proceedings.com/proc/p2014/BIC3092.pdf
twitter|@DOEKbase
After:
FAQ|https://docs.kbase.us/getting-started/faq
forum|https://www.kbase.us/support/
online documentation|https://docs.kbase.us/
training|https://www.kbase.us/learn/
twitter|@DOEKbase
Added:
FAQ|https://docs.kbase.us/getting-started/faq
forum|https://www.kbase.us/support/
online documentation|https://docs.kbase.us/
training|https://www.kbase.us/learn/
Removed:
FAQ|https://kbase.us/frequently-asked-questions/
forum|https://kbase.us/using-the-kbase-help-board/
online documentation|https://kbase.us/wp-content/uploads/2017/02/KBase-Brochure_1Feb2017.pdf
online documentation|http://worldcomp-proceedings.com/proc/p2014/BIC3092.pdf
'related_databases' has been modified:
Before:
National Microbiome Data Collaborative
After:
IMG/M: the integrated metagenome data management and comparative analysis system
CyVerse Data Common Repository
National Microbiome Data Collaborative
Added:
IMG/M: the integrated metagenome data management and comparative analysis system
CyVerse Data Common Repository
Removed:
'miriam_id' has been modified:
Before: None
After:
'organizations' has been modified:
Before:
United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
After:
United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
Argonne National Laboratory, Lemont, IL, USA|http://www.anl.gov|Maintains
Oak Ridge National Lab|https://www.ornl.gov/|Maintains
Brookhaven National Laboratory|https://www.bnl.gov/world/|Maintains
Added:
Argonne National Laboratory, Lemont, IL, USA|http://www.anl.gov|Maintains
Oak Ridge National Lab|https://www.ornl.gov/|Maintains
Brookhaven National Laboratory|https://www.bnl.gov/world/|Maintains
Removed:
Publications
The DOE Systems Biology Knowledgebase (KBase)
View ORCID ProfileAdam P. Arkin, Rick L Stevens, Robert W Cottingham, Sergei Maslov, Christopher S Henry, Paramvir Dehal, Doreen Ware, Fernando Perez, Nomi L Harris et.al...
bioRxiv 2016
View Paper (PubMed)
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Credit
Funds
Maintains
Grant Number(s)
DE-AC02-05CH11231
(United States Department of Energy, Office of Science, USA)
DE-AC02-06CH11357
(United States Department of Energy, Office of Science, USA)
DE-AC02-98CH10886
(United States Department of Energy, Office of Science, USA)
DE-AC05-00OR22725
(United States Department of Energy, Office of Science, USA)
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