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US Department of Energy Systems Biology Knowledgebase

Abbreviation:KBase

Recommended

General Information

KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.

Homepage https://www.kbase.us

Countries that developed this resource United States

Created in 2012

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: KBase; US Department of Energy Systems Biology Knowledgebase; DOI: https://doi.org/10.25504/FAIRsharing.jsxqrk; Last edited: Oct. 12, 2020, 11:28 a.m.; Last accessed: Oct 26 2021 9:49 a.m.

Publication for citation The DOE Systems Biology Knowledgebase (KBase) View ORCID ProfileAdam P. Arkin, Rick L Stevens, Robert W Cottingham, Sergei Maslov, Christopher S Henry, Paramvir Dehal, Doreen Ware, Fernando Perez, Nomi L Harris et.al...; bioRxiv ; 2016; doi.org/10.1101/096354;

This record is maintained by KBase (kbaseoutreach)

Record added: Feb. 23, 2017, 11:05 a.m.
Record updated: Oct. 12, 2020, 11:22 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.jsxqrk' by 'The FAIRsharing Team' at 11:22, 12 Oct 2020 (approved):

	'taxonomies' has been modified:
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			All
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			All
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	'onto_disciplines' has been modified:
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			Bioinformatics
			Systems Biology
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			Bioinformatics
			Systems Biology
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	'dataProcesses' has been modified:
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			Search & Submit (Free Login Required), data access, https://narrative.kbase.us/#login
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			Search & Submit (Free Login Required), data access, https://narrative.kbase.us/#login
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Edits to 'https://fairsharing.org/FAIRsharing.jsxqrk' by 'kbaseoutreach' at 16:19, 11 Aug 2020 (approved):

	'licences' has been modified:
		Before:
			KBase Terms and Condition|https://kbase.us/terms-and-conditions/|Data
			KBasePrivacy Policy|https://kbase.us/privacy-policy/|Data
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			KBase Terms and Condition|https://www.kbase.us/terms-and-conditions/|Data
			KBasePrivacy Policy|https://www.kbase.us/privacy-policy/|Data
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			KBase Terms and Condition|https://www.kbase.us/terms-and-conditions/|Data
			KBasePrivacy Policy|https://www.kbase.us/privacy-policy/|Data
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			KBase Terms and Condition|https://kbase.us/terms-and-conditions/|Data
			KBasePrivacy Policy|https://kbase.us/privacy-policy/|Data

	'supportLinks' has been modified:
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			FAQ|https://kbase.us/frequently-asked-questions/
			forum|https://kbase.us/using-the-kbase-help-board/
			online documentation|https://kbase.us/wp-content/uploads/2017/02/KBase-Brochure_1Feb2017.pdf
			online documentation|http://worldcomp-proceedings.com/proc/p2014/BIC3092.pdf
			twitter|@DOEKbase
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			FAQ|https://docs.kbase.us/getting-started/faq
			forum|https://www.kbase.us/support/
			online documentation|https://docs.kbase.us/
			training|https://www.kbase.us/learn/
			twitter|@DOEKbase
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			FAQ|https://docs.kbase.us/getting-started/faq
			forum|https://www.kbase.us/support/
			online documentation|https://docs.kbase.us/
			training|https://www.kbase.us/learn/
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			FAQ|https://kbase.us/frequently-asked-questions/
			forum|https://kbase.us/using-the-kbase-help-board/
			online documentation|https://kbase.us/wp-content/uploads/2017/02/KBase-Brochure_1Feb2017.pdf
			online documentation|http://worldcomp-proceedings.com/proc/p2014/BIC3092.pdf

	'related_databases' has been modified:
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			National Microbiome Data Collaborative
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			IMG/M: the integrated metagenome data management and comparative analysis system
			CyVerse Data Common Repository
			National Microbiome Data Collaborative
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			IMG/M: the integrated metagenome data management and comparative analysis system
			CyVerse Data Common Repository
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	'organizations' has been modified:
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			United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
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			United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
			Argonne National Laboratory, Lemont, IL, USA|http://www.anl.gov|Maintains
			Oak Ridge National Lab|https://www.ornl.gov/|Maintains
			Brookhaven National Laboratory|https://www.bnl.gov/world/|Maintains
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			Argonne National Laboratory, Lemont, IL, USA|http://www.anl.gov|Maintains
			Oak Ridge National Lab|https://www.ornl.gov/|Maintains
			Brookhaven National Laboratory|https://www.bnl.gov/world/|Maintains
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Support

General

FAQ	Getting started and FAQs
forum	Support
online documentation	KBase Documentation
training	Learn how to use KBase
twitter	KBase

Additional Information

Contact

Adam Arkin ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Search & Submit (Free Login Required)

https://narrative.kbase.us/#login

Publications

The DOE Systems Biology Knowledgebase (KBase)

View ORCID ProfileAdam P. Arkin, Rick L Stevens, Robert W Cottingham, Sergei Maslov, Christopher S Henry, Paramvir Dehal, Doreen Ware, Fernando Perez, Nomi L Harris et.al...
bioRxiv 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by KBase (kbaseoutreach)

Funds

United States Department of Energy, Office of Science, USA (Government body)

Maintains

Lawrence Berkeley National Laboratory (LBNL), CA, USA (Government body) Lead
Argonne National Laboratory, Lemont, IL, USA (Government body)
Oak Ridge National Lab
Brookhaven National Laboratory (Government body)

Grant Number(s)

DE-AC02-05CH11231 (United States Department of Energy, Office of Science, USA)
DE-AC02-06CH11357 (United States Department of Energy, Office of Science, USA)
DE-AC02-98CH10886 (United States Department of Energy, Office of Science, USA)
DE-AC05-00OR22725 (United States Department of Energy, Office of Science, USA)

US Department of Energy Systems Biology Knowledgebase

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