standards > model/format > DOI:10.25504/FAIRsharing.k97xzh


ready Sequence Alignment Map

Abbreviation: SAM


General Information
The Sequence Alignment/Map (SAM) format is a TAB-delimited text format consisting of a header section, which is optional, and an alignment section.



How to cite this record FAIRsharing.org: SAM; Sequence Alignment Map; DOI: https://doi.org/10.25504/FAIRsharing.k97xzh; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 19 2018 4:07 p.m.


Record updated: Nov. 28, 2016, 3:55 p.m. by The FAIRsharing Team.

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No XSD schemas defined


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Publications

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup
Bioinformatics 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (2)
modMine
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.

RhesusBase
A comprehensive online knowledgebase for the monkey research community.

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