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Sequence Alignment Map
Abbreviation: SAM
General Information
The Sequence Alignment/Map (SAM) format is a TAB-delimited text format consisting of a
header section, which is optional, and an alignment section.
How to cite this record
FAIRsharing.org: SAM; Sequence Alignment Map; DOI: https://doi.org/10.25504/FAIRsharing.k97xzh;
Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Sep 21 2020 7:42 a.m.
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Edits to 'https://fairsharing.org/FAIRsharing.k97xzh' by 'The FAIRsharing Team' at 15:55, 28 Nov 2016 (approved):
'name' has been modified:
Before: Sequence Alignment Map Format
After: Sequence Alignment Map Organisations have changed: Previous values: National Institute of Health (NIH)|USA National Institute of Health (NIH)|USA The 1000 Genome Project The Wellcome Trust The Wellcome Trust The Wellcome Trust Sanger Institute US National Institutes of Health (NIH) US National Institutes of Health (NIH) New values: National Institute of Health (NIH)|USA National Institute of Health (NIH)|USA The 1000 Genome Project The Wellcome Trust|UK The Wellcome Trust|UK The Wellcome Trust Sanger Institute|The Wellcome Trust Genome Campus|Hinxton|Cambridge CB10 1SA|UK. US National Institutes of Health (NIH) US National Institutes of Health (NIH)
Edits to 'https://fairsharing.org/FAIRsharing.k97xzh' by 'The FAIRsharing Team' at 11:14, 28 Nov 2016 (approved):
'homepage' has been modified:
Before: http://samtools.sourceforge.net/
After: https://github.com/samtools/samtools Organisations have changed: Previous values: The Wellcome Trust The Wellcome Trust The Wellcome Trust Sanger Institute US National Institutes of Health (NIH) US National Institutes of Health (NIH) US National Institutes of Health (NIH) New values: The Wellcome Trust The Wellcome Trust Sanger Institute US National Institutes of Health (NIH) US National Institutes of Health (NIH) The 1000 Genome Project
Edits to 'https://fairsharing.org/FAIRsharing.k97xzh' by 'The FAIRsharing Team' at 11:01, 28 Nov 2016 (approved):
'contactName' has been modified:
Before:
After:
Richard Durbin
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Edits to 'https://fairsharing.org/FAIRsharing.k97xzh' by 'The FAIRsharing Team' at 19:45, 22 Oct 2016 (approved):
'contactEmail' has been modified:
Before:
After: rd@sanger.ac.uk Domain list has changed: Previous values: Nucleic acid sequence|material|http://purl.obolibrary.org/obo/CHEBI_33696 Sequence Alignment|process|http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Sequence_Alignment Sequence data|property|http://purl.obolibrary.org/obo/OBI_0000973 New values: Nucleic acid sequence|material|http://purl.obolibrary.org/obo/CHEBI_33696 Sequence Alignment|process|http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Sequence_Alignment Sequence data|property|http://purl.obolibrary.org/obo/OBI_0000973 Life Science|domain| Organisations have changed: Previous values: New values: The Wellcome Trust Sanger Institute Grants have changed: Previous values: New values: U54HG002750 077192/Z/05/Z
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Additional Information
Publications
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup
Bioinformatics 2009
View Paper (PubMed)
View Publication
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Related Databases (2)
modMine
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.
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A comprehensive online knowledgebase for the monkey research community.
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