standards > model/format > DOI:10.25504/FAIRsharing.kfqVQ7


ready BcForms Grammar


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The BcForms represents complexes as a sets of subunits, including their stoichiometries, and a set of interchain/intersubunit crosslinks. Furthermore, BcForms can be combined with BpForms and SMILES descriptions of subunits to calculate properties of complexes. BcForms descriptions of complexes consist of two parts: subunit composition of the complex, and interchain crosslinks. The BcForms grammar is defined in Lark syntax, which is based on EBNF syntax.



How to cite this record FAIRsharing.org: BcForms Grammar; BcForms Grammar; DOI: https://doi.org/10.25504/FAIRsharing.kfqVQ7; Last edited: March 16, 2020, 1:42 p.m.; Last accessed: Nov 29 2020 11:22 p.m.

Publication for citation  BpForms and BcForms: Tools for concretely describing non-canonical polymers and complexes to facilitate comprehensive biochemical networks Paul F. Lang, Yassmine Chebaro, Xiaoyue Zheng, John A. P. Sekar, Bilal Shaikh, Darren A. Natale, Jonathan R. Karr; arXiv ; 2019.


This record is maintained by jonrkarr  ORCID

Record added: Nov. 6, 2019, 11:15 a.m.
Record updated: Feb. 27, 2020, 8:49 a.m. by The FAIRsharing Team.

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BpForms and BcForms: Tools for concretely describing non-canonical polymers and complexes to facilitate comprehensive biochemical networks

Paul F. Lang, Yassmine Chebaro, Xiaoyue Zheng, John A. P. Sekar, Bilal Shaikh, Darren A. Natale, Jonathan R. Karr
arXiv 2019

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  • INSPIRE (National Science Foundation (NSF), USA)

  • MIRA R35 award (National Institutes of Health (NIH), Bethesda, MD, USA)

  • P41 award (National Institutes of Health (NIH), Bethesda, MD, USA)