Cellular Microscopy Phenotype Ontology
Abbreviation: CMPO
Homepage http://www.ebi.ac.uk/cmpo/
Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom
Created in 2013
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: CMPO; Cellular Microscopy Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.knp11s; Last edited: Feb. 13, 2020, 9:30 a.m.; Last accessed: Jan 28 2021 4:17 p.m.
Publication for citation The cellular microscopy phenotype ontology. Jupp S,Malone J,Burdett T,Heriche JK,Williams E,Ellenberg J,Parkinson H,Rustici G; J Biomed Semantics ; 2016; 10.1186/s13326-016-0074-0;
Record added: Sept. 17, 2015, 9:11 a.m.
Record updated:
Feb. 13, 2020, 9:30 a.m. by The FAIRsharing Team.
support email | jupp@ebi.ac.uk |
support email | Helpdesk |
forum | GitHub Issue Tracker |
online documentation | GitHub Repository |
Additional Information
Contact | Gabriella Rustici ORCID |
External Links
Bioportal | http://bioportal.bioontology.org/ontologies/CMPO |
TeSS training resources
Cellular microscopy phenotype ontology cmpo quick tour
Zooma | https://www.ebi.ac.uk/spot/zooma/ |
NCBO Annotator | http://bioportal.bioontology.org/annotator |
No XSD schemas defined
Conditions of Use
Applies to: Data use Applies to: Database softwareData Release
Download (OWL) | https://www.ebi.ac.uk/cmpo/cmpo.owl |
Download (OBO) | https://www.ebi.ac.uk/cmpo/cmpo.obo |
Data Access
Browse / Search in OLS | https://www.ebi.ac.uk/ols/ontologies/cmpo |
The cellular microscopy phenotype ontology.
Jupp S,Malone J,Burdett T,Heriche JK,Williams E,Ellenberg J,Parkinson H,Rustici G
J Biomed Semantics 2016
View in BioPortal.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
MitoCheck aims to integrate information on cellular function of human genes while giving access to supporting information such as microscopy images of phenotypes.
Image Data Resource
IDR is a prototype platform for publishing, mining and integrating bioimaging data at scale, following the Euro-BioImaging/ELIXIR imaging strategy using the OMERO and Bio-Formats open source software built by the Open Microscopy Environment. Deployed on an OpenStack cloud running on the EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super-resolution microscopy, and digital pathology.
This record is not implemented by any policy.
Record Maintainer
This record is maintained by gabriellarustici ORCID
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
BioMedBridges, Europe (Consortium)
Systems Microscopy Network of Excellence, European Union (Consortium)
Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BB/M018423/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
EU FP7 258068 (Systems Microscopy Network of Excellence, European Union)
EU FP7 284209 (BioMedBridges, Europe)