Cellular Microscopy Phenotype Ontology

Abbreviation: CMPO

General Information

Cellular Microscopy Phenotype Ontology (CMPO), a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations

Homepage http://www.ebi.ac.uk/cmpo/

Developed in United Kingdom

Created in 2013

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: CMPO; Cellular Microscopy Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.knp11s; Last edited: Jan. 15, 2019, 1:30 p.m.; Last accessed: Apr 21 2019 6:08 a.m.

Publication for citation The cellular microscopy phenotype ontology. Jupp S,Malone J,Burdett T,Heriche JK,Williams E,Ellenberg J,Parkinson H,Rustici G; J Biomed Semantics ; 2016; 10.1186/s13326-016-0074-0;

This record is maintained by gabriellarustici ORCID

Record added: Sept. 17, 2015, 9:11 a.m.
Record updated: Jan. 15, 2019, 1:25 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.knp11s' by 'The FAIRsharing Team' at 13:25, 15 Jan 2019 (approved):

	'licences' has been modified:
		Before:
		After:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
		Added:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
		Removed:

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			BioMedBridges, Europe|http://www.biomedbridges.eu/|Funds
			EU FP7 BioMedBridges|http://www.biomedbridges.eu/|Funds
			EU FP7 Systems Microscopy|http://systemsmicroscopy.eu/|Funds
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			BioMedBridges, Europe|http://www.biomedbridges.eu/|Funds
			Systems Microscopy Network of Excellence, European Union|http://systemsmicroscopy.eu|Funds
		Added:
			Systems Microscopy Network of Excellence, European Union|http://systemsmicroscopy.eu|Funds
		Removed:
			EU FP7 BioMedBridges|http://www.biomedbridges.eu/|Funds
			EU FP7 Systems Microscopy|http://systemsmicroscopy.eu/|Funds
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
			search
			Download owl file
			Download obo file
		After:
			Search via OLS
			Download owl file
			Download obo file
			Browse in OLS
		Added:
			Search via OLS
			Browse in OLS
		Removed:
			search

Edits to 'https://fairsharing.org/FAIRsharing.knp11s' by 'The FAIRsharing Team' at 11:21, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Cellular component
			Life Science
			Microscopy
			Ontology and terminology
			Phenotype
		After:
			Cellular Component
			Life Science
			Microscopy
			Ontology and terminology
			Phenotype
		Added:
			Cellular Component
		Removed:
			Cellular component

In Collections

Cell Migration Standardisation Organisation

Support

General

contact form	CMPO Contact Form
support email	jupp@ebi.ac.uk
online documentation	GitHub Repository

Additional Information

Contact

Gabriella Rustici ORCID

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/CMPO

TeSS training resources

Cellular microscopy phenotype ontology cmpo quick tour

Tools

Zooma

http://www.ebi.ac.uk/fgpt/zooma

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Apache License 2.0

Data Access

Search via OLS	http://www.ebi.ac.uk/ols/ontologies/cmpo
Download owl file	http://www.ebi.ac.uk/cmpo/cmpo.owl
Download obo file	http://www.ebi.ac.uk/cmpo/cmpo.obo
Browse in OLS	https://www.ebi.ac.uk/ols/ontologies/cmpo

Publications

The cellular microscopy phenotype ontology.

Jupp S,Malone J,Burdett T,Heriche JK,Williams E,Ellenberg J,Parkinson H,Rustici G
J Biomed Semantics 2016

View Paper (PubMed) View Publication

CMPO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

MitoCheck
MitoCheck aims to integrate information on cellular function of human genes while giving access to supporting information such as microscopy images of phenotypes

Image Data Resource
IDR is a prototype platform for publishing, mining and integrating bioimaging data at scale, following the Euro-BioImaging/ELIXIR imaging strategy using the OMERO and Bio-Formats open source software built by the Open Microscopy Environment. Deployed on an OpenStack cloud running on the EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super-resolution microscopy, and digital pathology.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by gabriellarustici ORCID

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
BioMedBridges, Europe (Consortium)
Systems Microscopy Network of Excellence, European Union (Consortium)

Grant Number(s)

BB/M018423/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
EU FP7 258068 (Systems Microscopy Network of Excellence, European Union)
EU FP7 284209 (BioMedBridges, Europe)

Cellular Microscopy Phenotype Ontology

We need your help!

Developed by

Contact Us

About FAIRsharing