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DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources

Abbreviation:DECIPHER

General Information

DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources) is an interactive web-based resource that incorporates a suite of tools designed to aid the interpretation of submicroscopic chromosomal imbalance, inversions, and translocations.

Homepage https://decipher.sanger.ac.uk/

Countries that developed this resource United Kingdom

Created in 2008

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: DECIPHER; DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources; DOI: https://doi.org/10.25504/FAIRsharing.l8Sf5x; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jun 02 2020 8:48 a.m.

This record is maintained by JForeman

Record added: Aug. 3, 2018, 2:58 p.m.
Record updated: Nov. 21, 2018, 11:34 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 11:34, 21 Nov 2018 (not approved):

	'domains' has been modified:
		Before:
			Biomedical Science
			Chromosomal aberration
			Chromosome
			Genome visualisation
			Life Science
			Variant
		After:
			Biomedical Science
			Chromosomal aberration
			Chromosome
			Genome visualisation
			Life Science
			Sequence variant
		Added:
			Sequence variant
		Removed:
			Variant

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 17:19, 17 Oct 2018 (approved):

	'organizations' has been modified:
		Before:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			Cambridge South REC, UK|https://www.hra.nhs.uk/about-us/committees-and-services/res-and-recs/search-research-ethics-committees/|Funds
		After:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			Cambridge South REC, UK|https://www.hra.nhs.uk/about-us/committees-and-services/res-and-recs/search-research-ethics-committees/|Funds
			Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains
		Added:
			Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains
		Removed:

	'description' has been modified:
		Before: DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of submicroscopic chromosomal imbalance, inversions, and translocations.
		After: DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources) is an interactive web-based resource that incorporates a suite of tools designed to aid the interpretation of submicroscopic chromosomal imbalance, inversions, and translocations.

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 20:54, 09 Aug 2018 (approved):

	'licences' has been modified:
		Before:
			Data sharing|https://decipher.sanger.ac.uk/datasharing|Data
		After:
			DECIPHER Data Sharing|https://decipher.sanger.ac.uk/datasharing|Data
		Added:
			DECIPHER Data Sharing|https://decipher.sanger.ac.uk/datasharing|Data
		Removed:
			Data sharing|https://decipher.sanger.ac.uk/datasharing|Data

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'JForeman' at 09:32, 09 Aug 2018 (approved):

	'contactEmail' has been modified:
		Before: ganesh.swaminathan@sanger.ac.uk
		After: jf11@sanger.ac.uk

	'contact' has been modified:
		Before: G. Jawahar Swaminathan
		After: Julia Foreman

	'contactORCID' has been modified:
		Before: https://orcid.org/0000-0002-0215-4084
		After:

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 16:38, 03 Aug 2018 (approved):

	'licences' has been modified:
		Before:
		After:
			Data sharing|https://decipher.sanger.ac.uk/datasharing|Data
		Added:
			Data sharing|https://decipher.sanger.ac.uk/datasharing|Data
		Removed:

	'supportLinks' has been modified:
		Before:
		After:
			blog|https://decipher.sanger.ac.uk/
			contact form|https://decipher.sanger.ac.uk/
			email|decipher@sanger.ac.uk
			online documentation|https://decipher.sanger.ac.uk/files/pdfs/decipher_database_flowchart.pdf
			online documentation|https://decipher.sanger.ac.uk/files/pdfs/decipher_ethical_framework.pdf
		Added:
			blog|https://decipher.sanger.ac.uk/
			contact form|https://decipher.sanger.ac.uk/
			email|decipher@sanger.ac.uk
			online documentation|https://decipher.sanger.ac.uk/files/pdfs/decipher_database_flowchart.pdf
			online documentation|https://decipher.sanger.ac.uk/files/pdfs/decipher_ethical_framework.pdf
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Genome Browser
			Phenotype Browser
			Gene Browser
			Gene Disorders Browser
			CNV Syndromes Browser
			Search
			Login
			Download
		Added:
			Genome Browser
			Phenotype Browser
			Gene Browser
			Gene Disorders Browser
			CNV Syndromes Browser
			Search
			Login
			Download
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 16:27, 03 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
		After:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			Cambridge South REC, UK|https://www.hra.nhs.uk/about-us/committees-and-services/res-and-recs/search-research-ethics-committees/|Funds
		Added:
			Cambridge South REC, UK|https://www.hra.nhs.uk/about-us/committees-and-services/res-and-recs/search-research-ethics-committees/|Funds
		Removed:

	'grants' has been modified:
		Before:
			WT077008
		After:
			04/MRE05/50
			WT077008
		Added:
			04/MRE05/50
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.l8Sf5x' by 'The FAIRsharing Team' at 16:22, 03 Aug 2018 (approved):

	'related_databases' has been modified:
		Before:
		After:
			Pfam Protein Families
			Integrated resource of protein families, domains and functional sites
			Ensembl
			Online Mendelian Inheritance in Man
		Added:
			Pfam Protein Families
			Integrated resource of protein families, domains and functional sites
			Ensembl
			Online Mendelian Inheritance in Man
		Removed:

	'organizations' has been modified:
		Before:
		After:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
		Added:
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
		Removed:

	'grants' has been modified:
		Before:
		After:
			WT077008
		Added:
			WT077008
		Removed:

	'publications' has been modified:
		Before:
		After:
			DECIPHER: database for the interpretation of phenotype-linked plausibly pathogenic sequence and copy-number variation.|Bragin E,Chatzimichali EA,Wright CF,Hurles ME,Firth HV,Bevan AP,Swaminathan GJ|Nucleic Acids Res|2013
			DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.|Firth HV,Richards SM,Bevan AP,Clayton S,Corpas M,Rajan D,Van Vooren S,Moreau Y,Pettett RM,Carter NP|Am J Hum Genet|2009
		Added:
			DECIPHER: database for the interpretation of phenotype-linked plausibly pathogenic sequence and copy-number variation.|Bragin E,Chatzimichali EA,Wright CF,Hurles ME,Firth HV,Bevan AP,Swaminathan GJ|Nucleic Acids Res|2013
			DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.|Firth HV,Richards SM,Bevan AP,Clayton S,Corpas M,Rajan D,Van Vooren S,Moreau Y,Pettett RM,Carter NP|Am J Hum Genet|2009
		Removed:

Support

General

blog	https://decipher.sanger.ac.uk/
contact form	https://decipher.sanger.ac.uk/
support email	decipher@sanger.ac.uk
online documentation	https://decipher.sanger.ac.uk/files/pdfs ...
online documentation	https://decipher.sanger.ac.uk/files/pdfs ...

Additional Information

Contact

Julia Foreman

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

DECIPHER Data Sharing

Data Access

Genome Browser	https://decipher.sanger.ac.uk/browser
Phenotype Browser	https://decipher.sanger.ac.uk/phenogram
Gene Browser	https://decipher.sanger.ac.uk/genes
Gene Disorders Browser	https://decipher.sanger.ac.uk/disorders#gene-disorders
CNV Syndromes Browser	https://decipher.sanger.ac.uk/disorders#syndromes/overview
Search	https://decipher.sanger.ac.uk/
Login	https://decipher.sanger.ac.uk/
Download	https://decipher.sanger.ac.uk/about#downloads/data

Publications

DECIPHER: database for the interpretation of phenotype-linked plausibly pathogenic sequence and copy-number variation.

Bragin E,Chatzimichali EA,Wright CF,Hurles ME,Firth HV,Bevan AP,Swaminathan GJ
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Firth HV,Richards SM,Bevan AP,Clayton S,Corpas M,Rajan D,Van Vooren S,Moreau Y,Pettett RM,Carter NP
Am J Hum Genet 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Sequence Ontology

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by JForeman

Funds

Cambridge South REC, UK
The Wellcome Trust, UK (Charitable foundation)

Maintains

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK (Research institute) Lead

Grant Number(s)

04/MRE05/50 (Cambridge South REC, UK)
WT077008 (The Wellcome Trust, UK)

DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources

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