standards > terminology artifact > DOI:10.25504/FAIRsharing.lWbenx


ready Reference list of Metabolite names

Abbreviation: RefMet


General Information
RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding RefMet names. New metabolites are constantly being added to RefMet, however very new metabolite names generated by metabolomics experiments may not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.



How to cite this record FAIRsharing.org: RefMet; Reference list of Metabolite names; DOI: https://doi.org/10.25504/FAIRsharing.lWbenx; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Nov 25 2020 8:05 p.m.


This record is maintained by christinek  ORCID

Record added: Feb. 3, 2020, 5:56 p.m.
Record updated: Feb. 24, 2020, 12:56 p.m. by The FAIRsharing Team.

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Metabolomics Workbench
Experimental data generated by NIH Metabolomics Regional Comprehensive Metabolomics Resource Cores (RCMRC)s * and other NIH-sponsored projects is available for searching and analysis, via online interfaces. Users may also search the Metabolomics Workbench Metabolite Database, which now contains over 60,000 entries.

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