Record added: Feb. 3, 2020, 5:56 p.m.
Record updated: Dec. 16, 2020, 6:38 p.m. by christinek.

Edits to 'https://fairsharing.org/FAIRsharing.lWbenx' by 'The FAIRsharing Team' at 12:56, 24 Feb 2020 (approved):

	'description' has been modified:
		Before: RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding RefMet names. This is a work-in-progress with the caveat that many metabolite names generated by metabolomics experiments will not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.
		After: RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding RefMet names. New metabolites are constantly being added to RefMet, however very new metabolite names generated by metabolomics experiments may not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.

            

Edits to 'https://fairsharing.org/FAIRsharing.lWbenx' by 'The FAIRsharing Team' at 10:37, 04 Feb 2020 (approved):

	'description' has been modified:
		Before: RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding Refmet names. This is a work-in-progress with the caveat that many metabolite names generated by metabolomics experiments will not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.
		After: RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding RefMet names. This is a work-in-progress with the caveat that many metabolite names generated by metabolomics experiments will not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.

            

Edits to 'https://fairsharing.org/FAIRsharing.lWbenx' by 'The FAIRsharing Team' at 10:36, 04 Feb 2020 (approved):

	'organizations' has been modified:
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			University of California San Diego, CA, USA|http://ucsd.edu/|Maintains
			NIH Common Fund, USA|https://commonfund.nih.gov|Funds
		Added:
			University of California San Diego, CA, USA|http://ucsd.edu/|Maintains
			NIH Common Fund, USA|https://commonfund.nih.gov|Funds
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	'supportLinks' has been modified:
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			help|https://www.metabolomicsworkbench.org/databases/refmet/refmet_help.php
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			help|https://www.metabolomicsworkbench.org/databases/refmet/refmet_help.php
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	'description' has been modified:
		Before: The main objective of RefMet is to provide a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. The use of identifiers such as PubChem compound id's and InChiKeys offers only a partial solution because these identifiers will vary depending on parameters such as the salt form and degree of stereochemical detail. In addition, many metabolite species, especially lipids, are not reported by MS methods as discrete structures but rather as isobaric mixtures (such as PC(34:1) and TG(54:2)). To this end, a list of over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used as a starting point to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding Refmet names. This is a work-in-progress with the caveat that many metabolite names generated by metabolomics experiments will not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.
		After: RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding Refmet names. This is a work-in-progress with the caveat that many metabolite names generated by metabolomics experiments will not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.

	'licences' has been modified:
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			Free for non-commercial use||Data
			Metabolomics Workbench Terms of Use|http://www.metabolomicsworkbench.org/about/termsofuse.php|Data
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			Free for non-commercial use||Data
			Metabolomics Workbench Terms of Use|http://www.metabolomicsworkbench.org/about/termsofuse.php|Data
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	'onto_disciplines' has been modified:
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			Metabolomics
			Systems Biology
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			Metabolomics
			Systems Biology
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	'onto_domains' has been modified:
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			Classification
			metabolite
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			Classification
			metabolite
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	'dataProcesses' has been modified:
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			Download (txt)
			Browse / Search
			Search Structures
			Download (XLSX)
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			Download (txt)
			Browse / Search
			Search Structures
			Download (XLSX)
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	'taxonomies' has been modified:
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			All
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			All
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	'type' has been modified:
		Before: model/format
		After: terminology artifact