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VirHostNet 2.0

Abbreviation:VirHostNet

General Information

VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and virus/host protein-protein interactions complemented with publicly available data.

Homepage http://virhostnet.prabi.fr

Countries that developed this resource France

Created in 2007

Taxonomic range

Bacteria

Homo sapiens

Viruses

Knowledge Domains

Subjects

User-defined Tags

COVID-19

How to cite this record FAIRsharing.org: VirHostNet; VirHostNet 2.0; DOI: https://doi.org/10.25504/FAIRsharing.m3316t; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 29 2022 1:49 p.m.

This record is maintained by virhostnet

Record updated: April 20, 2021, 9:49 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'The FAIRsharing Team' at 09:49, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Publicly available data||Data
		After:
		Added:
		Removed:
			Attribution required||Data
			Publicly available data||Data

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 09:57, 17 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Funds
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined
		After:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Funds
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Maintains
		Added:
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Maintains
		Removed:
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 09:56, 17 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Maintains
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined
		After:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Funds
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined
		Added:
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Funds
		Removed:
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 09:50, 17 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Maintains
		After:
			Fondation Innovations en Infectiologie|http://www.finovi.org/:fr:start|Funds
			Universite de Lyon, France|https://www.universite-lyon.fr/version-anglaise/udl-en-6709.kjsp|Funds
			PRABI, Rhone-Alpes Bioinformatics Center, France|http://www.prabi.fr/|Maintains
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined
		Added:
			Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France|https://www.france-bioinformatique.fr/|Undefined
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'The FAIRsharing Team' at 16:11, 08 Apr 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			COVID-19
		Added:
			COVID-19
		Removed:

	'contact' has been modified:
		Before: navratil
		After: Vincent Navratil

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'The FAIRsharing Team' at 11:26, 03 Jul 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000120|Molecular Interaction Tabular
			bsg-s000228|FASTA Sequence Format
			bsg-s000232|GenBank Sequence Format
		After:
			bsg-s000120|Molecular Interaction Tabular
			bsg-s000228|FASTA Sequence Format
			bsg-s000232|GenBank Sequence Format
			bsg-s000154|NCBI Taxonomy
		Added:
			bsg-s000154|NCBI Taxonomy
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:53, 27 Jun 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000120|Molecular Interaction Tabular
		After:
			bsg-s000120|Molecular Interaction Tabular
			bsg-s000228|FASTA Sequence Format
			bsg-s000232|GenBank Sequence Format
		Added:
			bsg-s000228|FASTA Sequence Format
			bsg-s000232|GenBank Sequence Format
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:48, 27 Jun 2018 (approved):

	'organizations' has been modified:
		Before:
			Fondation Innovations en Infectiologie|Government body|Funds
			Universite de Lyon|University|Funds
		After:
			Fondation Innovations en Infectiologie|Government body|Funds
			Universite de Lyon|University|Funds
			PRABI|Rhone-Alpes Bioinformatics Center|France|Government body|Maintains
		Added:
			PRABI|Rhone-Alpes Bioinformatics Center|France|Government body|Maintains
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:46, 27 Jun 2018 (approved):

	'organizations' has been modified:
		Before:
			Fondation Innovations en Infectiologie|Government body|Funds
			Institut National de la Sante et de la Recherche Medicale (INSERM)|Paris|France|Government body|Maintains
		After:
			Fondation Innovations en Infectiologie|Government body|Funds
			Universite de Lyon|University|Funds
		Added:
			Universite de Lyon|University|Funds
		Removed:
			Institut National de la Sante et de la Recherche Medicale (INSERM)|Paris|France|Government body|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:45, 27 Jun 2018 (approved):

	'publications' has been modified:
		Before:
			VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.
			VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.
		After:
			VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.
			VirHostNet 2.0: surfing on the web of virus/host molecular interactions data.
		Added:
			VirHostNet 2.0: surfing on the web of virus/host molecular interactions data.
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:43, 27 Jun 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000061|Mosquito Insecticide Resistance Ontology
			bsg-s000120|Molecular Interaction Tabular
		After:
			bsg-s000120|Molecular Interaction Tabular
		Added:
		Removed:
			bsg-s000061|Mosquito Insecticide Resistance OntologyThere was a failure to add databases to this database. Offending items:
			virhostdb
			matrixdb
			ncbi Taxonomy

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:38, 27 Jun 2018 (approved):

	'name' has been modified:
		Before: VirHostNet
		After: VirHostNet 2.0

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'virhostnet' at 20:33, 27 Jun 2018 (approved):

	'description' has been modified:
		Before: VirHostNet integrates an extensive and original literature-curated dataset of virus_virus and virus_host interactions (2671 non-redundant interactions) representing more than 180 distinct viral species and one of the largest human interactome (10 672 proteins and 68 252 non-redundant interactions) reconstructed from publicly available data.
		After: VirHostNet integrates an extensive and original literature-curated dataset of virus_virus and virus_host interactions.

Edits to 'https://fairsharing.org/FAIRsharing.m3316t' by 'The FAIRsharing Team' at 11:18, 16 Sep 2016 (approved):

	'year' has been modified:
		Before: None
		After: 2007 Domain list has changed:  Previous values: Interactions|| New values:  Interactions|| Life Science|domain| Viruses|| Manual curation of the literature|| Publication List has changed:  Previous values: VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. New values:  VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Tools have changed:  Previous values: submit submit New values:  blast Support links have changed:  Previous values: http://pbildb1.univ-lyon1.fr/virhostnet/wiki/ New values:  https://pbil.univ-lyon1.fr/redmine/projects/virhostscape/wiki navratil@prabi.fr Data processes have changed:  Previous values: New values:  browse download Grants have changed:  Previous values: New values:  R12128CC

In Collections

COVID-19 Resources

RDA Covid-19 WG Resources

Support

General

support email	vincent.navratil@univ-lyon1.fr
help	https://pbil.univ-lyon1.fr/redmine/proje ...

Additional Information

Contact

Vincent Navratil ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Access

virhostscape	http://virhostnet.prabi.fr/index.html
download	http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/qu ...

Publications

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.

Navratil V., de Chassey B., Meyniel L., Delmotte S., Gautier C., André P., Lotteau V., Rabourdin-Combe C.,
Nucleic Acids Res. 2009

View Paper (PubMed) View Publication

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data.

Guirimand T,Delmotte S,Navratil V
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

NCBI Taxonomy

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by virhostnet

Funds

Fondation Innovations en Infectiologie (Government body)
Universite de Lyon, France (University)
PRABI, Rhone-Alpes Bioinformatics Center, France (Government body)

Maintains

Institut Francais de Bioinformatique (IFB, French Institute of Bioinformatics), France (Research institute)

Grant Number(s)

R12128CC (Fondation Innovations en Infectiologie)

VirHostNet 2.0

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