Protein InFormation Resource Format
Created in 1993
Scope and data types
How to cite this record FAIRsharing.org: PIFRF; Protein InFormation Resource Format; DOI: https://doi.org/10.25504/FAIRsharing.m5swgj; Last edited: Feb. 22, 2018, 2:03 p.m.; Last accessed: Sep 24 2018 4:23 p.m.
Record updated: Nov. 28, 2016, 10:03 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.m5swgj' by 'The FAIRsharing Team' at 10:02, 28 Nov 2016 (approved): 'shortname' has been modified: Before: Protein InFormation Resource Format After: PIFRF
Edits to 'https://fairsharing.org/FAIRsharing.m5swgj' by 'The FAIRsharing Team' at 11:33, 22 Oct 2016 (approved): 'description' has been modified: Before: "Protein InFormation Resource Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://emboss.sourceforge.net/docs/themes/seqformats/NbrfFormat.html. This text was generated automatically. If you work on the project responsible for "Protein InFormation Resource Format" then please consider helping us by claiming this record and updating it appropriately. After: This PIR Database File Structure and Format Specification describes the files comprising the PIR-International Protein Sequence Database and the format of each. The format has been enhanced significantly for Release 39.00 to what is referred to as "enhanced NBRF" format.
No XSD schemas defined
Conditions of Use
No publications available
No guidelines defined
No semantic standards defined
Models and Formats
No syntax standards defined
No identifier schema standards defined
This is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins. The nearly completed sets of MIPs have been identified from the completed genome sequence of organisms available at NCBI. The structural models of MIP proteins were created by defined protocol. The database aims to provide key information of MIPs in particular based on sequence as well as structures. This will further help to decipher the function of uncharacterized MIPs.
PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments organised as Structural Superfamilies). PASS2 contains alignments of protein structures at the superfamily level and is in direct correspondence with SCOPe 2.04 release.
Integrated resource of protein families, domains and functional sites
InterPro is an integrated database of predictive protein "signatures" used for the classification and automatic annotation of proteins and genomes. InterPro classifies sequences at superfamily, family and subfamily levels, predicting the occurrence of functional domains, repeats and important sites.
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