standards > model/format > DOI:10.25504/FAIRsharing.m5swgj
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ready Protein InFormation Resource Format

Abbreviation: PIFRF


General Information
This PIR Database File Structure and Format Specification describes the files comprising the PIR-International Protein Sequence Database and the format of each. The format has been enhanced significantly for Release 39.00 to what is referred to as "enhanced NBRF" format.

Homepage http://emboss.sourceforge.net/docs/themes/seqformats/NbrfFormat.html

Developed in Germany , Japan , United States

Created in 1993

Taxonomic range

Knowledge Domains  BETA




How to cite this record FAIRsharing.org: PIFRF; Protein InFormation Resource Format; DOI: https://doi.org/10.25504/FAIRsharing.m5swgj; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 24 2019 10:38 a.m.


Record updated: Nov. 28, 2016, 10:03 a.m. by The FAIRsharing Team.

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Schemas

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Publications

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Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

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Metrics

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Implementing Databases (3)
MIPModDB: A Central Resource for the Superfamily of Major Intrinsic Proteins
This is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins. The nearly completed sets of MIPs have been identified from the completed genome sequence of organisms available at NCBI. The structural models of MIP proteins were created by defined protocol. The database aims to provide key information of MIPs in particular based on sequence as well as structures. This will further help to decipher the function of uncharacterized MIPs.
PASS2
PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments organised as Structural Superfamilies). PASS2 contains alignments of protein structures at the superfamily level and is in direct correspondence with SCOPe 2.04 release.
Integrated resource of protein families, domains and functional sites
InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro consortium.

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This record is not implemented by any policy.


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Maintains

  • PIR (Research institute)