databases > DOI:10.25504/FAIRsharing.m90ne8
FAIRsharing is in read-only mode until September while we migrate our data to our new, improved system. In the meantime, please read our blog post or get in touch with us if you need to edit or add records, or have any questions.

ready Human Mitochondrial Database

Abbreviation:HmtDB

General Information
HmtDB is an open resource created to support population genetics and mitochondrial disease studies. The database hosts human mitochondrial genome sequences annotated with population and variability data, the latter being estimated through the application of the SiteVar/MitVarProt programs, based on site-specific nucleotide and aminoacid variability calculations. The annotations are manually curated thus adding value to the quality of the information provided to the end-user.

Homepage http://www.hmtdb.uniba.it

Countries that developed this resource Italy

Created in 2004

Taxonomic range

Knowledge Domains 





How to cite this record FAIRsharing.org: HmtDB; Human Mitochondrial Database; DOI: https://doi.org/10.25504/FAIRsharing.m90ne8; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jul 27 2021 11:56 a.m.


Record updated: June 30, 2021, 1:02 p.m. by The FAIRsharing Team.

Show edit history


Support

General

support email hmtdb.update@uniba.it
online documentation https://github.com/mitoNGS/MToolBox

Additional Information

Contact Marcella Attimonelli

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Release

biannual release (as in twice a year) No link recorded

Data Curation

computed prediction of haplogroup No link recorded
computed estimation of site specific variability[SiteVar algorithm] No link recorded
manual curation No link recorded

Data Access

The genome sequences their multialignments and the genome cards can be freely downloaded. No link recorded
download http://www.hmtdb.uniba.it/hmdb/jsp/download.html



Publications

HmtDB, a human mitochondrial genomic resource based on variability studies supporting population genetics and biomedical research.

Attimonelli M., Accetturo M., Santamaria M., Lascaro D., Scioscia G., Pappadà G., Russo L., Zanchetta L., Tommaseo-Ponzetta M.,
BMC Bioinformatics 2005

View Paper (PubMed) View Publication

Development of a special electrode for continuous subcutaneous pH measurement in the infant scalp.

Stamm O., Latscha U., Janecek P., Campana A.,
Am. J. Obstet. Gynecol. 1976

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains