Worldwide Protein Data Bank
Abbreviation:wwPDB
Homepage http://www.wwpdb.org
Countries that developed this resource Japan , United Kingdom , United States
Created in 2003
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: wwPDB; Worldwide Protein Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.mckkb4; Last edited: Aug. 19, 2019, 4:40 p.m.; Last accessed: Sep 19 2019 10:19 a.m.
Publication for citation Announcing the worldwide Protein Data Bank Helen Berman, Kim Henrick & Haruki Nakamura; Nature Structural & Molecular Biology ; 2003; 10.1038/nsb1203-980;
Record added: May 20, 2015, 1:05 p.m.
Record updated:
Aug. 19, 2019, 4:39 p.m. by The FAIRsharing Team.
| FAQ | General FAQ |
| FAQ | Deposition FAQ |
| contact form | Contact Details |
| online documentation | File Format Docs |
| online documentation | Download Statistics |
| training | Deposition Tour |
Additional Information
| Contact | info@wwpdb.org |
TeSS training resources
| wwPDB Validation Service | https://validate.wwpdb.org |
Conditions of Use
Applies to: Data use- wwPDB Privacy and Data Usage
- Attribution required
- Free for commercial use
- Free for non-commercial use
Data Curation
| Data deposition | https://deposit-2.wwpdb.org/deposition/ |
Data Access
| Download Data | http://www.wwpdb.org/ftp/pdb-ftp-sites |
REST Web Services
| wwPDB Validation Service API | http://www.wwpdb.org/validation/onedep-validation-web-service-interfac ... |
Announcing the worldwide Protein Data Bank
Helen Berman, Kim Henrick & Haruki Nakamura
Nature Structural & Molecular Biology 2003
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- ProtoNet
- Compilation and Creation of datasets from PDB
- Nematode.net
- Pocket Similarity Search using Multiple-Sketches
- MetalPDB
- FireDB
- Chemical Component Dictionary
- Protein Data Bank in Europe
- STRING
- ArchDB
- Protein Data Bank Japan
- RCSB Protein Data Bank
- 3D interacting domains
- Antimicrobial Peptide Database
- Biological Magnetic Resonance Databank
- Structural Biology Data Grid
- Database of local DNA conformers
- Mutual Folding Induced by Binding Database
- Disordered Binding Sites Database
- Small angle scattering biological data bank
- PDZscape
- database of Disease-Gene Associations with annotated Relationships
- PROtein-protein compleX MutAtion ThErmodynamics Database
- Allosteric Mutation Analysis and Polymorphism of Signaling database
- TargetMine
- Protein Data Bank
- Cell Press - Current Biology - Information for Authors
- Cell Press - Neuron - Information for Authors
- Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition
- Springer Nature - Nature Structural & Molecular Biology - Availability of Data and materials
- Cell Press - Cell Metabolism - Information for Authors
- Springer Nature - Nature Genetics - Availability of Data and materials
- The Plant Cell - Instructions for Authors
- Cell Press - Cell Stem Cell - Information for Authors
- Springer Nature - Nature Chemical Biology - Availability of Data and materials
- Springer Nature Research Data Policy Type 1
- Springer Nature Research Data Policy Type 3 (for life sciences)
- Cold Spring Harbor Lab Press - Genome Research
- Springer Nature - Nature Materials - Availability of Data and materials
- Springer Nature - Nature Biotechnology - Availability of Data and materials
- Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission
- Rockefeller University Press - Journal Of Cell Biology - Data Deposition
- European Molecular Biology Organisation Press Recommended Databases and Data Standards
- GigaScience - Minimum Standards of Reporting Checklist
- Springer Nature - Research Data Policies
- National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies
- eLife Recommended Repositories and Standards
- Springer Nature - Nature - Availability of Data and materials
- American Society for Biochemistry and Molecular Biology - Molecular and Cellular Proteomics - Resources for Authors
- Public Library of Science Recommended Data Repositories
- Springer Nature - Nature Photonics - Availability of Data and materials
- Cell Press - Trends In Plant Science - Information for Authors
- Cell Press - Immunity - Information for Authors
- Cell Press - Molecular Cell - Information for Authors
- American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability
- Cell Press - Cell Host & Microbe - Information for Authors
- Elsevier Data Policy
- Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council
- Springer Nature - Nature Immunology - Availability of Data and materials
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Springer Nature - Nature Chemistry - Availability of Data and materials
- Springer Nature - Nature Medicine - Availability of Data and materials
- Springer Nature - Nature Nanotechology - Availability of Data and materials
- Springer Nature Research Data Policy Type 2 (for life sciences)
- Springer Nature Research Data Policy Type 4
- Gates Open Research Data Guidelines
- Springer Nature Research Data Policy Type 2
- Springer Nature Research Data Policy Type 3
- Cell Press - Developmental Cell - Information for Authors
- BioMed Central - Minimum Standards of Reporting Checklist
- Cell Press - Cancer Cell - Information for Authors
- Cell Press - Cell - Information for Authors
Record Maintainer
This record is in need of a maintainer. If you login, you'll be able to claim this record.
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
U.S. Department of Energy (Government body)
National Science Foundation (NSF), USA (Government body)
The Wellcome Trust, UK (Charitable foundation)
European Union (EU) (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
National Bioscience Database Center (NBDC), Tokyo, Japan (Research institute)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Government body)
Maintains
