standards > terminology artifact > DOI:10.25504/FAIRsharing.mf91p5


ready Ontology for MicroRNA Target

Abbreviation: OMIT


General Information
The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).

Homepage http://omnisearch.soc.southalabama.edu/w/index.php/Ontology

Developed in United States

Created in 2010

Taxonomic range







How to cite this record FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Feb. 22, 2018, 2:05 p.m.; Last accessed: Nov 21 2018 3:51 a.m.


Record updated: Jan. 12, 2018, 2:14 p.m. by The FAIRsharing Team.

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Support

No support information provided.

Additional Information

Contact Jingshan Huang

External Links

Bioportal http://bioportal.bioontology.org/ontologies/OMIT

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

OMIT: dynamic, semi-automated ontology development for the microRNA domain.

Huang J,Dang J,Borchert GM,Eilbeck K,Zhang H,Xiong M,Jiang W,Wu H,Blake JA,Natale DA,Tan M
PLoS One 2014

View Paper (PubMed) View Publication

OMIT: a domain-specific knowledge base for microRNA target prediction.

Huang J,Townsend C,Dou D,Liu H,Tan M
Pharm Res 2011

View Paper (PubMed) View Publication

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.

Huang J,Gutierrez F,Strachan HJ,Dou D,Huang W,Smith B,Blake JA,Eilbeck K,Natale DA,Lin Y,Wu B,Silva Nd,Wang X,Liu Z,Borchert GM,Tan M,Ruttenberg A
J Biomed Semantics 2016

View Paper (PubMed) View Publication

OMIT Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (0)

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Implementing Policies

This record is not implemented by any policy.


Credit

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Funds

Maintains

Grant Number(s)

  • 1350064 (US National Science Foundation (NSF))

  • U01CA180982 (U.S. National Library of Medicine)