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Ontology for MicroRNA Target

Abbreviation: OMIT

General Information

The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).

Homepage http://omnisearch.soc.southalabama.edu/w/index.php/Ontology

Countries that developed this resource United States

Created in 2010

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Aug 10 2020 9:19 a.m.

Publication for citation OMIT: dynamic, semi-automated ontology development for the microRNA domain. Huang J,Dang J,Borchert GM,Eilbeck K,Zhang H,Xiong M,Jiang W,Wu H,Blake JA,Natale DA,Tan M; PLoS One ; 2014; 10.1371/journal.pone.0100855;

Record updated: Nov. 28, 2019, 5:46 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.mf91p5' by 'The FAIRsharing Team' at 17:46, 28 Nov 2019 (approved):

	'related_standards' has been modified:
		Before:
			Subject Resource Application Ontology
			Chemical Entities of Biological Interest
			Basic Formal Ontology
			Domain Resource Application Ontology
		After:
			Subject Resource Application Ontology
			Chemical Entities of Biological Interest
			Basic Formal Ontology
			Domain Resource Application Ontology
			Sequence Ontology
			Gene Ontology
			Disease Ontology
			Foundational Model of Anatomy
		Added:
			Sequence Ontology
			Gene Ontology
			Disease Ontology
			Foundational Model of Anatomy
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Biology
		After:
			Biology
			Life Science
			Ontology and Terminology
		Added:
			Life Science
			Ontology and Terminology
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.mf91p5' by 'The FAIRsharing Team' at 14:33, 11 Mar 2019 (approved):

	'licences' has been modified:
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			Creative Commons Attribution 3.0 Unported (CC BY 3.0)|https://creativecommons.org/licenses/by/3.0/|Data
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			Creative Commons Attribution 3.0 Unported (CC BY 3.0)|https://creativecommons.org/licenses/by/3.0/|Data
		Removed:

	'supportLinks' has been modified:
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		After:
			forum|https://github.com/OmniSearch/omit/issues
			online documentation|https://github.com/OmniSearch/omit
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			forum|https://github.com/OmniSearch/omit/issues
			online documentation|https://github.com/OmniSearch/omit
		Removed:

	'related_standards' has been modified:
		Before:
		After:
			Chemical Entities of Biological Interest
			Basic Formal Ontology
		Added:
			Chemical Entities of Biological Interest
			Basic Formal Ontology
		Removed:

	'miriam_id' has been modified:
		Before: None
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	'dataProcesses' has been modified:
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			Download (OWL)
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			Download (OWL)
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Edits to 'https://fairsharing.org/FAIRsharing.mf91p5' by 'The FAIRsharing Team' at 11:01, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Annotation
			Cell
			Gene
			Gene prediction
			Micro RNA (miRNA)
			Molecular entity
			Molecular interaction
			Prediction and recognition
			Protein
			Regulation of gene expression
		After:
			Annotation
			Biology
			Cell
			Computational predictions
			Gene
			Gene prediction
			Micro RNA (miRNA)
			Molecular entity
			Molecular interaction
			Protein
			Regulation of gene expression
		Added:
			Biology
			Computational predictions
		Removed:
			Prediction and recognition

Edits to 'https://fairsharing.org/FAIRsharing.mf91p5' by 'The FAIRsharing Team' at 18:04, 01 Nov 2016 (approved):

	'name' has been modified:
		Before: Ontology for MicroRNA Target Prediction
		After: Ontology for MicroRNA Target

Support

General

forum	GitHub Issue Tracker
online documentation	GitHub Repository

Additional Information

Contact

Jingshan Huang

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/OMIT
OBO	http://obofoundry.org/ontology/omit.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 3.0 Unported (CC BY 3.0)

Data Release

Download (OWL)

http://purl.obolibrary.org/obo/omit.owl

Publications

OMIT: dynamic, semi-automated ontology development for the microRNA domain.

Huang J,Dang J,Borchert GM,Eilbeck K,Zhang H,Xiong M,Jiang W,Wu H,Blake JA,Natale DA,Tan M
PLoS One 2014

View Paper (PubMed) View Publication

OMIT: a domain-specific knowledge base for microRNA target prediction.

Huang J,Townsend C,Dou D,Liu H,Tan M
Pharm Res 2011

View Paper (PubMed) View Publication

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.

Huang J,Gutierrez F,Strachan HJ,Dou D,Huang W,Smith B,Blake JA,Eilbeck K,Natale DA,Lin Y,Wu B,Silva Nd,Wang X,Liu Z,Borchert GM,Tan M,Ruttenberg A
J Biomed Semantics 2016

View Paper (PubMed) View Publication

OMIT Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

No Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Science Foundation (NSF), USA (Government body)
U.S. National Library of Medicine (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

University of South Alabama, USA (University)
OMIT Administrators (Consortium) Lead

Grant Number(s)

1350064 (National Science Foundation (NSF), USA)
U01CA180982 (U.S. National Library of Medicine)

Ontology for MicroRNA Target

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