CellFinder

General Information

CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.

Homepage http://cellfinder.org/

Developed in Germany

Created in 2011

Taxonomic range

All

Knowledge Domains BETA

Subjects BETA

How to cite this record FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Mar 26 2019 3:48 a.m.

This record is maintained by cellfinder

Record updated: Sept. 9, 2016, 4:08 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.mt6057' by 'The FAIRsharing Team' at 17:52, 06 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			Prof. Dr. Andreas Kurtz
		After:
			Andreas Kurtz
			Domain list has changed: 
			Previous values:
			Cell|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#sao1813327414
			Gene expression|property|
			Life Science|domain|
			Manual curation|x|
			New values: 
			Gene expression|property|
			Life Science|domain|
			Manual curation|x|
			Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087
			Images|property|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11005
			Cell|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#sao1813327414
			Manual curation of the literature||
			Publication List has changed: 
			Previous values:
			Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
			New values: 
			Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
			CellFinder: a cell data repository.
			Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization.
			Tools have changed: 
			Previous values:
			semantic body browser
			search
			browse
			New values: 
			semantic body browser
			Compare Tool
			Marker Tool
			Support links have changed: 
			Previous values:
			http://cellfinder.de/contact
			New values: 
			http://cellfinder.de/contact
			http://cellfinder.org/help/faq
			https://www.youtube.com/watch?v=14oGjsLsE0I
			Data processes have changed: 
			Previous values:
			New values: 
			search
			browse
			Grants have changed: 
			Previous values:
			New values: 
			KU 851/3-1
			LE 1428/3-1
			334502
			KU 851/3-1
		Added:
		Removed:

Support

General

FAQ	http://cellfinder.org/help/faq
contact form	http://cellfinder.de/contact
help	https://www.youtube.com/watch?v=14oGjsLs ...

Additional Information

Contact

Andreas Kurtz

Tools

semantic body browser	http://sbb.cellfinder.org
Compare Tool	http://cellfinder.org/analysis/compare
Marker Tool	http://cellfinder.org/analysis/marker

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)

Applies to: General

Cell Finder Copyright

Data Access

search	http://cellfinder.de/search/?name
browse	http://cellfinder.de/browse/

Publications

Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.

Neves M, Damaschun A, Mah N, Lekschas F, Seltmann S, Stachelscheid H, Fontaine JF, Kurtz A, Leser U.
Database 2013

View Paper (PubMed) View Publication

CellFinder: a cell data repository.

Stachelscheid H,Seltmann S,Lekschas F,Fontaine JF,Mah N,Neves M,Andrade-Navarro MA,Leser U,Kurtz A
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization.

Lekschas F,Stachelscheid H,Seltmann S,Kurtz A
Bioinformatics 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by cellfinder

Funds

Deutsche Forschungsgemeinschaft (Government body)
European Commission (Government body)

Grant Number(s)

334502 (European Commission)
KU 851/3-1 (Deutsche Forschungsgemeinschaft)
KU 851/3-1 (Deutsche Forschungsgemeinschaft)
LE 1428/3-1 (Deutsche Forschungsgemeinschaft)

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