databases > DOI:10.25504/FAIRsharing.mtkc4

ready EffectiveDB

General Information
The Effective database contains pre-calculated predictions of bacterial secreted proteins and of functional secretion systems. Effective bundles various tools to recognize Type III secretion signals, conserved binding sites of Type III chaperones, eukaryotic-like domains and subcellular targeting signals in the host. Beyond the analysis of arbitrary protein sequence collections, the new release of Effective also provides a "genome-mode", in which protein sequences from nearly complete genomes or metagenomic bins can be screened for the presence of three important secretion systems (type III, IV, VI).

Homepage http://effectivedb.org

Developed in Austria , Canada

Created in 2010

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How to cite this record FAIRsharing.org: EffectiveDB; EffectiveDB; DOI: https://doi.org/10.25504/FAIRsharing.mtkc4; Last edited: Feb. 22, 2018, 2:59 p.m.; Last accessed: Sep 26 2018 7:57 a.m.


This record is maintained by rattei  ORCID

Record added: Nov. 11, 2015, 10:39 a.m.
Record updated: Dec. 15, 2016, 7:29 a.m. by The FAIRsharing Team.

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Publications

Effective--a database of predicted secreted bacterial proteins.

Jehl MA,Arnold R,Rattei T
Nucleic Acids Res 2010

View Paper (PubMed) View Publication

EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.

Eichinger V,Nussbaumer T,Platzer A,Jehl MA,Arnold R,Rattei T
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

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  • DFG RA 1719/1-1 (Deutsche Forschungsgemeinschaft)

  • I 2191 (Austrian Science Fund (FWF))