Identifiers.org Central Registry

General Information

The Identifiers.org Central Registry service provides a centralized directory of Compact Identifiers. This website allows performing searches on the registry by using the search bar on the right side or the Registry Browser. Resource maintainers can also find the Prefix Registration Request form to request a prefix in Identifiers.org for their databases or services.

Homepage https://registry.identifiers.org/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2006

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: Identifiers.org Central Registry; Identifiers.org Central Registry; DOI: https://doi.org/10.25504/FAIRsharing.n14rc8; Last edited: Feb. 6, 2020, 12:06 p.m.; Last accessed: Oct 21 2020 10:57 a.m.

Publication for citation Uniform resolution of compact identifiers for biomedical data. Wimalaratne SM,Juty N,Kunze J,Janee G,McMurry JA,Beard N,Jimenez R,Grethe JS,Hermjakob H,Martone ME,Clark T; Sci Data ; 2018; 10.1038/sdata.2018.29;

This record is maintained by sarala

Record updated: Feb. 6, 2020, 12:05 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 12:05, 06 Feb 2020 (approved):

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			NIH Common Fund, USA|https://commonfund.nih.gov|Funds
			Freya Project, European Union|https://www.project-freya.eu/en|Funds
		Added:
			NIH Common Fund, USA|https://commonfund.nih.gov|Funds
			Freya Project, European Union|https://www.project-freya.eu/en|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			email|identifiers-org@ebi.ac.uk
			online documentation|https://identifiers.org/documentation
			twitter|@IdentifiersOrg
		After:
			FAQ|http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			email|identifiers-org@ebi.ac.uk
			forum|https://github.com/identifiers-org/identifiers-org.github.io/issues
			online documentation|https://docs.identifiers.org/
			online documentation|https://docs.identifiers.org/articles/docs/key_facts.html
			online documentation|https://docs.identifiers.org/articles/docs/identification_scheme.html
			online documentation|https://docs.identifiers.org/articles/docs/resolving_mechanisms.html
			online documentation|https://docs.identifiers.org/articles/docs/metadata_service.html
			twitter|@IdentifiersOrg
		Added:
			forum|https://github.com/identifiers-org/identifiers-org.github.io/issues
			online documentation|https://docs.identifiers.org/
			online documentation|https://docs.identifiers.org/articles/docs/key_facts.html
			online documentation|https://docs.identifiers.org/articles/docs/identification_scheme.html
			online documentation|https://docs.identifiers.org/articles/docs/resolving_mechanisms.html
			online documentation|https://docs.identifiers.org/articles/docs/metadata_service.html
		Removed:
			online documentation|https://identifiers.org/documentation

	'description' has been modified:
		Before: The core of the Registry is a catalogue of data collections (corresponding to e.g. controlled vocabularies, databases), their URIs and the corresponding physical URLs (or resources). These resources are monitored daily to ensure data accessibility and the validity of the resolution mechanism.
		After: The Identifiers.org Central Registry service provides a centralized directory of Compact Identifiers. This website allows performing searches on the registry by using the search bar on the right side or the Registry Browser. Resource maintainers can also find the Prefix Registration Request form to request a prefix in Identifiers.org for their databases or services.

	'countries' has been modified:
		Before:
			European Union
			United Kingdom
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
		Removed:
			European Union

	'tools' has been modified:
		Before:
			SPARQL Endpoint||https://identifiers.org/services/sparql
			.info service||https://identifiers.org/info
		After:
			.info service||https://identifiers.org/info
			Java library for identifiers.org Web Services||https://github.com/identifiers-org/cloud-libapi
		Added:
			Java library for identifiers.org Web Services||https://github.com/identifiers-org/cloud-libapi
		Removed:
			SPARQL Endpoint||https://identifiers.org/services/sparql

	'dataProcesses' has been modified:
		Before:
			continuous release (live database)
			Request a prefix
			Download
			Browse
			Search
		After:
			continuous release (live database)
			Request a prefix
			Download
			Browse
			Search
			Register resource
		Added:
			Register resource
		Removed:

	'publications' has been modified:
		Before:
			MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.|Laibe C., Le Novere N., |BMC Syst Biol|2007
			Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.|Juty N,Le Novere N,Laibe C|Nucleic Acids Res|2011
		After:
			MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.|Laibe C., Le Novere N., |BMC Syst Biol|2007
			Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.|Juty N,Le Novere N,Laibe C|Nucleic Acids Res|2011
			Uniform resolution of compact identifiers for biomedical data.|Wimalaratne SM,Juty N,Kunze J,Janee G,McMurry JA,Beard N,Jimenez R,Grethe JS,Hermjakob H,Martone ME,Clark T|Sci Data|2018
		Added:
			Uniform resolution of compact identifiers for biomedical data.|Wimalaratne SM,Juty N,Kunze J,Janee G,McMurry JA,Beard N,Jimenez R,Grethe JS,Hermjakob H,Martone ME,Clark T|Sci Data|2018
		Removed:

	'shortname' has been modified:
		Before: Identifiers.org
		After: Identifiers.org Central Registry

	'accessPoints' has been modified:
		Before:
			REST|https://identifiers.org/restws|Identifiers.org Registry service
		After:
			REST|https://docs.identifiers.org/articles/api.html|Identifiers.org API
			Other|https://docs.identifiers.org/articles/docs/sparql.html|SPARQL Endpoint
		Added:
			REST|https://docs.identifiers.org/articles/api.html|Identifiers.org API
			Other|https://docs.identifiers.org/articles/docs/sparql.html|SPARQL Endpoint
		Removed:
			REST|https://identifiers.org/restws|Identifiers.org Registry service

	'homepage' has been modified:
		Before: https://identifiers.org/
		After: https://registry.identifiers.org/

	'name' has been modified:
		Before: Identifiers.org Registry
		After: Identifiers.org Central Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:53, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'licences' has been modified:
		Before:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
		After:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Added:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data

	'dataProcesses' has been modified:
		Before:
			continuous release (live database)
			Request a prefix
			Download
			browse
			search
		After:
			continuous release (live database)
			Request a prefix
			Download
			Browse
			Search
		Added:
			Browse
			Search
		Removed:
			browse
			search

	'miriam_id' has been modified:
		Before: None
		After: MIR:00000599

	'accessPoints' has been modified:
		Before:
			REST|https://identifiers.org/rest|Identifiers.org Registry service
		After:
			REST|https://identifiers.org/restws|Identifiers.org Registry service
		Added:
			REST|https://identifiers.org/restws|Identifiers.org Registry service
		Removed:
			REST|https://identifiers.org/rest|Identifiers.org Registry service

	'tools' has been modified:
		Before:
		After:
			SPARQL Endpoint||https://identifiers.org/services/sparql
			.info service||https://identifiers.org/info
		Added:
			SPARQL Endpoint||https://identifiers.org/services/sparql
			.info service||https://identifiers.org/info
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:19, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:15, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:11, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:11, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:58, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:28, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:17, 23 Nov 2017 (approved):

	'contactName' has been modified:
		Before:
			Nicolas Le Novre
		After:
			
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:16, 23 Nov 2017 (approved):

	'supportLinks' has been modified:
		Before:
			http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			biomodels-net-support@lists.sf.net
			http://www.ebi.ac.uk/miriam/main/mdb?section=docs
			@biomodels
			https://en.wikipedia.org/wiki/MIRIAM_Registry
		After:
			http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			identifiers-org@ebi.ac.uk
			https://identifiers.org/documentation
			@IdentifiersOrg
		Added:
			identifiers-org@ebi.ac.uk
			https://identifiers.org/documentation
			@IdentifiersOrg
		Removed:
			biomodels-net-support@lists.sf.net
			http://www.ebi.ac.uk/miriam/main/mdb?section=docs
			@biomodels
			https://en.wikipedia.org/wiki/MIRIAM_Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:15, 23 Nov 2017 (approved):

	'dataProcesses' has been modified:
		Before:
			continuous release (live database)
			Curated data
			access to historical files available
			Download
			browse
			submit
			search
		After:
			continuous release (live database)
			Request a prefix
			Download
			browse
			search
		Added:
			Request a prefix
		Removed:
			Curated data
			access to historical files available
			submit

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:14, 23 Nov 2017 (approved):

	'accessPoints' has been modified:
		Before:
			Other|http://www.ebi.ac.uk/miriam/main/mdb?section=ws_help
			REST|http://www.ebi.ac.uk/miriamws/main/rest/
		After:
			REST|https://identifiers.org/rest
		Added:
			REST|https://identifiers.org/rest
		Removed:
			Other|http://www.ebi.ac.uk/miriam/main/mdb?section=ws_help
			REST|http://www.ebi.ac.uk/miriamws/main/rest/

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:14, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Identifiers.org Registry
		After: Sarala Wimalaratne

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:13, 23 Nov 2017 (approved):

	'contactName' has been modified:
		Before:
			Nicolas Le Novre
		After:
			Sarala Wimalaratne
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:13, 23 Nov 2017 (approved):

	'countries' has been modified:
		Before:
			European Union
		After:
			European Union
			United Kingdom
		Added:
			United Kingdom
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:12, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: Identifiers.org Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:12, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:11, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:10, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:10, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 21:51, 22 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 09:41, 22 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:39, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:39, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:36, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 13:07, 25 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Nicolas Le Novre
		Added:
		Removed:

In Collections

Bioschemas

EOSC-Life

Systems Medicine

Support

General

FAQ	Identifiers.org FAQ
support email	Identifiers.org Helpdesk
forum	GitHub Issue Tracker
online documentation	Documentation
online documentation	Key Facts
online documentation	Identification Scheme
online documentation	Resolving Mechanisms
online documentation	Metadata Service
twitter	@IdentifiersOrg

Additional Information

Contact

Sarala Wimalaratne ORCID

Tools

.info service	https://identifiers.org/info
Java library for identifiers.org Web Services	https://github.com/identifiers-org/cloud-libapi

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

continuous release (live database)

https://n2t.net/ark:/13030/c7xk84q2j

Data Curation

Request a prefix	https://registry.identifiers.org/prefixregistrationrequest
Register resource	https://registry.identifiers.org/resourceregistrationrequest

Data Access

Download	https://identifiers.org/download
Browse	https://registry.identifiers.org/registry
Search	https://identifiers.org/search

REST Web Services

Identifiers.org API

https://docs.identifiers.org/articles/api.html

Other Web Services

SPARQL Endpoint

https://docs.identifiers.org/articles/docs/sparql.html

Publications

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.

Laibe C., Le Novere N.,
BMC Syst Biol 2007

View Paper (PubMed) View Publication

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Juty N,Le Novere N,Laibe C
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Uniform resolution of compact identifiers for biomedical data.

Wimalaratne SM,Juty N,Kunze J,Janee G,McMurry JA,Beard N,Jimenez R,Grethe JS,Hermjakob H,Martone ME,Clark T
Sci Data 2018

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information Required In the Annotation of Models

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Pathway Commons

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by sarala

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Open PHACTS (Consortium)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
NIH Common Fund, USA (Government body)
Freya Project, European Union (Government body)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)

Maintains

ELIXIR-Hub, UK (Government body)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Grant Number(s)

BB/E005748/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
JPA 1729 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

Identifiers.org Central Registry

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