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Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis

Abbreviation: MIRAGE MS

General Information

MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. Researchers seeking to understand the biochemical structure–function relationships of carbohydrates require detailed descriptions of the assay conditions and the experimental results. Currently, these data are insufficiently reported in the literature. A basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the following conditions/parameters: released glycans or still attached to protein/lipid; type of glycan (N-glycan, O-glycan, proteoglycan fragment); and sample pre-treatment prior MS-Analyses (non, reduced, permethylated, endo/exoglycosidase digested, fluorescent label, online/offline LC-separation).

Homepage http://www.beilstein-institut.de/en/projects/mirage/guidelines#mass_spectrometric_analysis

Countries that developed this resource Germany , United Kingdom , United States

Created in 2013

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MIRAGE MS; Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis; DOI: https://doi.org/10.25504/FAIRsharing.n7src9; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jul 27 2021 4:02 p.m.

This record is maintained by CKettner ORCID

Record updated: July 13, 2021, 8:48 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 20:48, 13 Jul 2021 (approved):

	'supportLinks' has been modified:
		Before:
			online documentation|http://www.beilstein-institut.de/download/458/mirage_ms_guidelines__1.0.pdf
		After:
		Added:
		Removed:
			online documentation|http://www.beilstein-institut.de/download/458/mirage_ms_guidelines__1.0.pdf

	'publications' has been modified:
		Before:
			The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data|Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS|Mol Cell Proteomics|2012
			MIRAGE: The minimum information required for a glycomics experiment|York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo K-H, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, and Kettner C|Glycobiology|2014
			The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.|Struwe WB,Agravat S,Aoki-Kinoshita KF,Campbell MP,Costello CE,Dell A,Ten Feizi,Haslam SM,Karlsson NG,Khoo KH,Kolarich D,Liu Y,McBride R,Novotny MV,Packer NH,Paulson JC,Rapp E,Ranzinger R,Rudd PM,Smith DF,Tiemeyer M,Wells L,York WS,Zaia J,Kettner C|Glycobiology|2016
		After:
			The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data|Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS|Mol Cell Proteomics|2012
			MIRAGE: The minimum information required for a glycomics experiment|York WS, Agravat S, Aoki-Kinoshita KF et al.|Glycobiology|2014
			The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.|Struwe WB,Agravat S,Aoki-Kinoshita KF,Campbell MP,Costello CE,Dell A,Ten Feizi,Haslam SM,Karlsson NG,Khoo KH,Kolarich D,Liu Y,McBride R,Novotny MV,Packer NH,Paulson JC,Rapp E,Ranzinger R,Rudd PM,Smith DF,Tiemeyer M,Wells L,York WS,Zaia J,Kettner C|Glycobiology|2016
		Added:
			MIRAGE: The minimum information required for a glycomics experiment|York WS, Agravat S, Aoki-Kinoshita KF et al.|Glycobiology|2014
		Removed:
			MIRAGE: The minimum information required for a glycomics experiment|York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo K-H, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, and Kettner C|Glycobiology|2014

	'dataProcesses' has been modified:
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			Download Guideline, data release, https://www.beilstein-institut.de/download/458/mirage_ms_guidelines__1.0.pdf
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			Download Guideline, data release, https://www.beilstein-institut.de/download/458/mirage_ms_guidelines__1.0.pdf
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Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 16:30, 04 Mar 2019 (approved):

	'licences' has been modified:
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			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
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			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
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Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'CKettner' at 09:11, 22 Feb 2019 (approved):

	'licences' has been modified:
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			CC-BY 4.0|https://creativecommons.org/licenses/by/4.0/|Data
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			CC-BY 4.0|https://creativecommons.org/licenses/by/4.0/|Data
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			MIRAGE
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			MIRAGE
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	'miriam_id' has been modified:
		Before: None
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	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-8697-6842

	'countries' has been modified:
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			Germany
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			Germany
			United Kingdom
			United States
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			United Kingdom
			United States
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Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 13:59, 30 Nov 2016 (approved):

	'description' has been modified:
		Before: MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. Researchers seeking to understand the biochemical structurefunction relationships of carbohydrates require detailed descriptions of the assay conditions and the experimental results. Currently, these data are insufficiently reported in the literature. A basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the following conditions/parameters:  released glycans or still attached to protein/lipid; type of glycan (N-glycan, O-glycan, proteoglycan fragment); and sample pre-treatment prior MS-Analyses (non, reduced, permethylated, endo/exoglycosidase digested, fluorescent label, online/offline LC-separation).
		After: MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. Researchers seeking to understand the biochemical structurefunction relationships of carbohydrates require detailed descriptions of the assay conditions and the experimental results. Currently, these data are insufficiently reported in the literature. A basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the following conditions/parameters:  released glycans or still attached to protein/lipid; type of glycan (N-glycan, O-glycan, proteoglycan fragment); and sample pre-treatment prior MS-Analyses (non, reduced, permethylated, endo/exoglycosidase digested, fluorescent label, online/offline LC-separation).

Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 20:17, 20 Oct 2016 (approved):

	'name' has been modified:
		Before: Minimum Information Required for A Glycomics Experiment - MS Guidelines
		After: Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis

Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 20:04, 20 Oct 2016 (approved):

	'homepage' has been modified:
		Before: http://www.beilstein-institut.de/en/projects/mirage/guidelines
		After: http://www.beilstein-institut.de/en/projects/mirage/guidelines#mass_spectrometric_analysis

Edits to 'https://fairsharing.org/FAIRsharing.n7src9' by 'The FAIRsharing Team' at 20:02, 20 Oct 2016 (approved):

	'description' has been modified:
		Before: We believe that a basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the conditions/parameters mentioned below. Parameters that should be included could be: Released glycans or still attached to protein/lipid/ Type of glycan (N-glycan|O-glycan,proteoglycan fragment,) Sample pre-treatment prior MS-Analyses (non|reduced|permethylated|endo/exoglycosidase digested|fluorescent label|online/offline LC-separation| 
		After: MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. Researchers seeking to understand the biochemical structurefunction relationships of carbohydrates require detailed descriptions of the assay conditions and the experimental results. Currently, these data are insufficiently reported in the literature. A basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the following conditions/parameters:  released glycans or still attached to protein/lipid; type of glycan (N-glycan, O-glycan, proteoglycan fragment); and sample pre-treatment prior MS-Analyses (non, reduced, permethylated, endo/exoglycosidase digested, fluorescent label, online/offline LC-separation).

In Collections

ISO/CD 20691 Collection - DRAFT

Support

No support information provided.

Additional Information

Contact

Carsten Kettner ORCID

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

Download Guideline

https://www.beilstein-institut.de/download/458/mirage_ms_guidelines__1 ...

Publications

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data

Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS
Mol Cell Proteomics 2012

View Paper (PubMed) View Publication

MIRAGE: The minimum information required for a glycomics experiment

York WS, Agravat S, Aoki-Kinoshita KF et al.
Glycobiology 2014

View Paper (PubMed) View Publication

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB,Agravat S,Aoki-Kinoshita KF,Campbell MP,Costello CE,Dell A,Ten Feizi,Haslam SM,Karlsson NG,Khoo KH,Kolarich D,Liu Y,McBride R,Novotny MV,Packer NH,Paulson JC,Rapp E,Ranzinger R,Rudd PM,Smith DF,Tiemeyer M,Wells L,York WS,Zaia J,Kettner C
Glycobiology 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (4)

UniCarbKB
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data.

UniCarb-DB
UniCarb-DB is a curated database of glycomic mass spectrometry fragment data.

UniCarb-DR
A repository of glycans with associated MS information and spectra. The repository allows researcher to submit their glycomics MS data for public display. The data is not curated by other than then data provider. Curated data will be transfered to UniCarb-DR

GlycoPOST
GlycoPOST is a mass spectrometry data repository for glycomics. Users can release their "raw/processed" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by CKettner ORCID

Funds

Beilstein-Institut, Frankfurt am Main, Germany (Charitable foundation)
European Commission FP7 (Government body)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

The Complex Carbohydrate Research Center (CCRC), University of Georgia, GA, USA (Research institute)

Grant Number(s)

MIRAGE (Beilstein-Institut, Frankfurt am Main, Germany)

Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis

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