standards > model/format > DOI:10.25504/FAIRsharing.namxfm
Did we miss something? Our COVID-19 Collection is growing, but not yet complete. Tell us what's missing. Email contact@fairsharing.org or add missing resources to our spreadsheet


ready Functional Genomics Experiment Markup Language

Abbreviation: FuGE-ML


General Information
Functional genomics experiments present many challenges in data archiving, sharing and querying. As the size and complexity of data generated from such experiments grows, so does the requirement for standard data formats. To address these needs, the Functional Genomics Experiment [Object Model / Markup-Language] (FuGE-OM, FuGE-ML) has been created to facilitate the development of data standards.FuGE is a model of the shared components in different functional genomics domains. FuGE facilitates the development of data standards in functional genomics in two ways: 1. FuGE provides a model of common components in functional genomics investigations, such as materials, data, protocols, equipment and software. These models can be extended to develop modular data formats with consistent structure. 2. FuGE provides a framework for capturing complete laboratory workflows, enabling the integration of pre-existing data formats. In this context, FuGE allows the capture of additional metadata that gives formats a context within the complete workflow. FuGE is available as a UML model and an XML Schema

Homepage http://fuge.sourceforge.net/dev/index.php

Countries that developed this resource European Union , United Kingdom , United States

Created in 2005

Taxonomic range




How to cite this record FAIRsharing.org: FuGE-ML; Functional Genomics Experiment Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.namxfm; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jul 13 2020 6:50 a.m.


Record updated: March 15, 2018, 10:20 a.m. by The FAIRsharing Team.

Show edit history


In Collections
RDA Covid-19 WG Resources


Support

General

help http://fuge.sourceforge.net/dev/V1Final/ ...
Mailing List None

Additional Information

Contact Andy Jones

Tools

    No tools defined


Schemas
  • Name: FuGE
  • Version: 1.0
Download

Access / Retrieve Data

Conditions of Use





Publications

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.

Jones AR,Miller M,Aebersold R,Apweiler R,Ball CA,Brazma A,Degreef J,Hardy N,Hermjakob H,Hubbard SJ,Hussey P,Igra M,Jenkins H,Julian RK Jr,Laursen K,Oliver SG,Paton NW,Sansone SA,Sarkans U,Stoeckert CJ Jr,Taylor CF,Whetzel PL,White JA,Spellman P,Pizarro A
Nat Biotechnol 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (0)

No Related Databases


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • 1P41HG003619 (National Institutes of Health (NIH), Bethesda, MD, USA)