standards > reporting guideline > DOI:10.25504/FAIRsharing.nd9ce9


ready Minimum Information about Plant Phenotyping Experiment

Abbreviation: MIAPPE


General Information
MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. A basic reference implementation of MIAPPE has been proposed for the ISA-Tab format. Other current developments include a Breeding API (BrAPI) implementation.

Homepage http://miappe.org

Countries that developed this resource European Union

Subjects 




How to cite this record FAIRsharing.org: MIAPPE; Minimum Information about Plant Phenotyping Experiment; DOI: https://doi.org/10.25504/FAIRsharing.nd9ce9; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Apr 17 2021 4:22 p.m.


This record is maintained by hcwi  ORCID  and cpommier  ORCID

Record updated: Feb. 7, 2021, 8:43 p.m. by The FAIRsharing Team.

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In Collections
ISO/CD 20691 Collection - DRAFT
Wheat Data Interoperability Guidelines


Support

General

support email miappe@ebi.ac.uk
online documentation https://miappe.org
online documentation Latest specifications and support resour ...
online documentation http://cropnet.pl/phenotypes

Additional Information

Contact Paweł Krajewski   ORCID

TeSS training resources 

Plant Phenotyping Data managment (MIAPPE)



Tools
ISA-Tools http://www.isa-tools.org/

Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Cwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S
J Exp Bot 2015

View Paper (PubMed) View Publication

Measures for interoperability of phenotypic data: minimum information requirements and formatting

Cwiek-Kupczynska, H.; Altmann, T.; Arend, D.; Arnaud, E.; Chen, D.; Cornut, G.; Fiorani, F.; Frohmberg, W.; Junker, A.; Klukas, C.; Lange, M.; Mazurek, C.; Nafissi, A.; Neveu, P.; van Oeveren, J.; Pommier, C.; [...] ; Kersey, P. Krajewski, P.
Plant Methods 2016

View Paper (PubMed) View Publication

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, [...], Paul J. Kersey, Célia M. Miguel, Anne‐Françoise Adam‐Blondon and Cyril Pommier
New Phytologist 2020

View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (4)
Plant Genomics and Phenomics Research Data Repository
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in January 2015. The background of the study is in plant genetic resources, in particular the association of genotypes and phenotypes. This archive aims to provide data from the "system plant" - from the root to bloom and seed, as well from sequence analysis to systems biology.Ge
Genetic and Genomic Information System
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
CyVerse Data Common Repository
The Data Commons provides services to manage, organize, preserve, publish, discover, and reuse data. Using our pipelines, you can easily publish data to the NCBI or directly to the CyVerse Data Commons. CyVerse Curated Data are stable and have DOIs. Community Released Data are maintained by community members and may not be permanent.
Collaborative Open Plant Omics
COPO is a portal for plant scientists to describe, store and retrieve data more easily, using community standards and public repositories that enable the open sharing of results. COPO can link your outputs to your ORCiD profile. By tracking unique identifiers and DOIs, COPO can provide a way to monitor usage and get credit for your work, such as source code or research data, which still are not typically cited in the majority of scientific papers. COPO Wizards allow metadata to be added to your research objects with guided help and natural workflows. COPO can suggest metadata that might be appropriate for your data based on past submissions and similar workflows.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 031A053A/B/C (Bundesministerium fur Bildung und Forschung)

  • 283496 (European FP7 Research infrastructures)

  • 28443 (European FP7 Research infrastructures)

  • ANR-11-INBS-0012 (Programme d'Investissements d'Avenir, National Research Agency (ANR), Paris, France)