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Minimum Information about Plant Phenotyping Experiment

Abbreviation: MIAPPE

General Information

MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. A basic reference implementation of MIAPPE has been proposed for the ISA-Tab format. Other current developments include a Breeding API (BrAPI) implementation.

Homepage http://miappe.org

Countries that developed this resource European Union

Taxonomic range

Knowledge Domains

Subjects

User-defined Tags

Metadata standardization

Plant Phenotypes and Traits

How to cite this record FAIRsharing.org: MIAPPE; Minimum Information about Plant Phenotyping Experiment; DOI: https://doi.org/10.25504/FAIRsharing.nd9ce9; Last edited: May 1, 2020, 4:17 p.m.; Last accessed: Aug 09 2020 4:10 p.m.

This record is maintained by hcwi ORCID and cpommier ORCID

Record updated: April 28, 2020, 6:06 p.m. by hcwi.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'hcwi' at 18:06, 28 Apr 2020 (approved):

	'supportLinks' has been modified:
		Before:
			email|miappe@ebi.ac.uk
			online documentation|http://cropnet.pl/phenotypes
			online documentation|http://cropnet.pl/phenotypes/wp-content/uploads/2016/04/MIAPPE.pdf
			online documentation|https://www.miappe.org/support/
		After:
			email|miappe@ebi.ac.uk
			online documentation|https://miappe.org
			online documentation|https://www.miappe.org/support/
			online documentation|http://cropnet.pl/phenotypes
		Added:
			online documentation|https://miappe.org
		Removed:
			online documentation|http://cropnet.pl/phenotypes/wp-content/uploads/2016/04/MIAPPE.pdf

	'publications' has been modified:
		Before:
			Towards recommendations for metadata and data handling in plant phenotyping.|Krajewski P, Chen D, Cwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S|J Exp Bot|2015
			Measures for interoperability of phenotypic data: minimum information requirements and formatting|Cwiek-Kupczynska, H.; Altmann, T.; Arend, D.; Arnaud, E.; Chen, D.; Cornut, G.; Fiorani, F.; Frohmberg, W.; Junker, A.; Klukas, C.; Lange, M.; Mazurek, C.; Nafissi, A.; Neveu, P.; van Oeveren, J.; Pommier, C.; Poorter, H.; Rocca-Serra, P.; Sansone, S.; Scholz, U.; van Schriek, M.; Seren, U.; Usadel, B.; Weise, S.; Kersey, P. Krajewski, P.|Plant Methods|2016
		After:
			Towards recommendations for metadata and data handling in plant phenotyping.|Krajewski P, Chen D, Cwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S|J Exp Bot|2015
			Measures for interoperability of phenotypic data: minimum information requirements and formatting|Cwiek-Kupczynska, H.; Altmann, T.; Arend, D.; Arnaud, E.; Chen, D.; Cornut, G.; Fiorani, F.; Frohmberg, W.; Junker, A.; Klukas, C.; Lange, M.; Mazurek, C.; Nafissi, A.; Neveu, P.; van Oeveren, J.; Pommier, C.; Poorter, H.; Rocca-Serra, P.; Sansone, S.; Scholz, U.; van Schriek, M.; Seren, U.; Usadel, B.; Weise, S.; Kersey, P. Krajewski, P.|Plant Methods|2016
			Enabling reusability of plant phenomic datasets with MIAPPE 1.1|Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N. Athanasiadis, Ins Chaves, Frederik Coppens, Guillaume Cornut, Bruno V. Costa, Hanna wiekKupczyska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham J. King, Pawe Krajewski, Matthias Lange, MarieAnglique Laporte, Clia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorter, Ricardo RamrezGonzalez, iva Ramak, Jochen C. Reif, Philippe RoccaSerra, SusannaAssunta Sansone, Uwe Scholz, Franois Tardieu, Cristobal Uauy Bjrn Usadel, Richard G.F. Visser, Stephan Weise, Paul J. Kersey, Clia M. Miguel, AnneFranoise AdamBlondon and Cyril Pommier|New Phytologist|2020
		Added:
			Enabling reusability of plant phenomic datasets with MIAPPE 1.1|Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N. Athanasiadis, Ins Chaves, Frederik Coppens, Guillaume Cornut, Bruno V. Costa, Hanna wiekKupczyska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham J. King, Pawe Krajewski, Matthias Lange, MarieAnglique Laporte, Clia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorter, Ricardo RamrezGonzalez, iva Ramak, Jochen C. Reif, Philippe RoccaSerra, SusannaAssunta Sansone, Uwe Scholz, Franois Tardieu, Cristobal Uauy Bjrn Usadel, Richard G.F. Visser, Stephan Weise, Paul J. Kersey, Clia M. Miguel, AnneFranoise AdamBlondon and Cyril Pommier|New Phytologist|2020
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'cpommier' at 18:24, 04 Apr 2019 (approved):

	'supportLinks' has been modified:
		Before:
			email|info@miappe.org
			online documentation|http://cropnet.pl/phenotypes
			online documentation|http://cropnet.pl/phenotypes/wp-content/uploads/2016/04/MIAPPE.pdf
		After:
			email|miappe@ebi.ac.uk
			online documentation|http://cropnet.pl/phenotypes
			online documentation|http://cropnet.pl/phenotypes/wp-content/uploads/2016/04/MIAPPE.pdf
			online documentation|https://www.miappe.org/support/
		Added:
			email|miappe@ebi.ac.uk
			online documentation|https://www.miappe.org/support/
		Removed:
			email|info@miappe.org

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'cpommier' at 17:48, 04 Apr 2019 (approved):

	'contactEmail' has been modified:
		Before: miappe-steering@ebi.ac.uk
		After: pkra@igr.poznan.pl

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'cpommier' at 17:43, 04 Apr 2019 (approved):

	'contactEmail' has been modified:
		Before: pkra@igr.poznan.pl
		After: miappe-steering@ebi.ac.uk

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'The FAIRsharing Team' at 23:21, 12 Jul 2018 (approved):

	'miriam_url' has been modified:
		Before: None
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Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'hcwi' at 16:22, 11 Apr 2017 (approved):

	'homepage' has been modified:
		Before: http://cropnet.pl/phenotypes/?page_id=15
		After: http://miappe.org

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'The FAIRsharing Team' at 13:51, 29 Nov 2016 (approved):

	'homepage' has been modified:
		Before: http://cropnet.pl/phenotypes
		After: http://cropnet.pl/phenotypes/?page_id=15 Support links have changed:  Previous values: http://cropnet.pl/phenotypes New values:  http://cropnet.pl/phenotypes http://cropnet.pl/phenotypes/wp-content/uploads/2016/04/MIAPPE.pdf

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'The FAIRsharing Team' at 18:39, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'The FAIRsharing Team' at 18:11, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'The FAIRsharing Team' at 17:55, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 17:44, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 17:15, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 17:14, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 15:59, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 15:59, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

Edits to 'https://fairsharing.org/FAIRsharing.nd9ce9' by 'agbeltran' at 15:58, 10 Nov 2016 (approved):

	'description' has been modified:
		Before: A reporting guideline for plant phenotyping experiments. Comprises a checklist, i.e., a list of attributes that may be necessary to fully describe an experiment so that it is understandable and replicable. Should be consulted by people recording and depositing the data. Covers description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. To read more|please visit http://cropnet.pl/phenotypes
		After: MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype.

In Collections

Wheat Data Interoperability Guidelines

Support

General

support email	miappe@ebi.ac.uk
online documentation	https://miappe.org
online documentation	Latest specifications and support resour ...
online documentation	http://cropnet.pl/phenotypes

Additional Information

Contact

Paweł Krajewski ORCID

Tools

ISA-Tools

http://www.isa-tools.org/

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Publications

Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Cwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S
J Exp Bot 2015

View Paper (PubMed) View Publication

Measures for interoperability of phenotypic data: minimum information requirements and formatting

Cwiek-Kupczynska, H.; Altmann, T.; Arend, D.; Arnaud, E.; Chen, D.; Cornut, G.; Fiorani, F.; Frohmberg, W.; Junker, A.; Klukas, C.; Lange, M.; Mazurek, C.; Nafissi, A.; Neveu, P.; van Oeveren, J.; Pommier, C.; Poorter, H.; Rocca-Serra, P.; Sansone, S.; Scholz, U.; van Schriek, M.; Seren, U.; Usadel, B.; Weise, S.; Kersey, P. Krajewski, P.
Plant Methods 2016

View Paper (PubMed) View Publication

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N. Athanasiadis, Inês Chaves, Frederik Coppens, Guillaume Cornut, Bruno V. Costa, Hanna Ćwiek‐Kupczyńska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham J. King, Paweł Krajewski, Matthias Lange, Marie‐Angélique Laporte, Célia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorter, Ricardo Ramırez‐Gonzalez, Živa Ramšak, Jochen C. Reif, Philippe Rocca‐Serra, Susanna‐Assunta Sansone, Uwe Scholz, François Tardieu, Cristobal Uauy Björn Usadel, Richard G.F. Visser, Stephan Weise, Paul J. Kersey, Célia M. Miguel, Anne‐Françoise Adam‐Blondon and Cyril Pommier
New Phytologist 2020

View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Investigation Study Assay Tabular

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (3)

Plant Genomics and Phenomics Research Data Repository
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in January 2015. The background of the study is in plant genetic resources, in particular the association of genotypes and phenotypes. This archive aims to provide data from the "system plant" - from the root to bloom and seed, as well from sequence analysis to systems biology.Ge

Genetic and Genomic Information System
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.

CyVerse Data Common Repository
The Data Commons provides services to manage, organize, preserve, publish, discover, and reuse data. Using our pipelines, you can easily publish data to the NCBI or directly to the CyVerse Data Commons. CyVerse Curated Data are stable and have DOIs. Community Released Data are maintained by community members and may not be permanent.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by hcwi ORCID and cpommier ORCID

Funds

European FP7 Research infrastructures (Government body)
Institut National de la Recherche Agronomique, France (Consortium)
Programme d'Investissements d'Avenir, National Research Agency (ANR), Paris, France (Government body)
Bundesministerium fur Bildung und Forschung (Government body)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)

Maintains

Forschungszentrum Juelich, Juelich, Germany (Government body)
European Commission under FP7 Grant Agreement (Government body)
Institute of Plant Genetics, Polish Academy of Sciences (IPG PAS), Pozna_, Poland (Government body)
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany (Government body)
RWTH Aachen, Germany (University)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)

Grant Number(s)

031A053A/B/C (Bundesministerium fur Bildung und Forschung)
283496 (European FP7 Research infrastructures)
28443 (European FP7 Research infrastructures)
ANR-11-INBS-0012 (Programme d'Investissements d'Avenir, National Research Agency (ANR), Paris, France)

Minimum Information about Plant Phenotyping Experiment

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