Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

Abbreviation:PDBePISA

General Information

The Protein Quaternary Structure file server (PDBePISA) is an internet resource that makes available coordinates for likely quaternary states for structures contained in the Brookhaven Protein Data Bank (PDB) that were determined by X-ray crystallography.

Homepage http://www.ebi.ac.uk/pdbe/pqs/

Countries that developed this resource European Union

Created in 1997

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PDBePISA; Protein Data Bank: Proteins, Interfaces, Structures and Assemblies; DOI: https://doi.org/10.25504/FAIRsharing.nm2z1h; Last edited: Jan. 10, 2019, 1:32 p.m.; Last accessed: Jul 22 2019 9:08 a.m.

Publication for citation Inference of macromolecular assemblies from crystalline state. Krissinel E,Henrick K; J Mol Biol ; 2007; 10.1016/j.jmb.2007.05.022;

Record updated: Jan. 10, 2019, 1:31 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 13:31, 10 Jan 2019 (approved):

	'supportLinks' has been modified:
		Before:
			email|support@ebi.ac.uk
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
		After:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			email|support@ebi.ac.uk
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Added:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Removed:

	'accessPoints' has been modified:
		Before:
		After:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Added:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			PQS: a protein quaternary structure file server.|Henrick K., Thornton JM., |Trends Biochem. Sci.|1998
		After:
			PQS: a protein quaternary structure file server.|Henrick K., Thornton JM., |Trends Biochem. Sci.|1998
			Inference of macromolecular assemblies from crystalline state.|Krissinel E,Henrick K|J Mol Biol|2007
		Added:
			Inference of macromolecular assemblies from crystalline state.|Krissinel E,Henrick K|J Mol Biol|2007
		Removed:

	'organizations' has been modified:
		Before:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 11:48, 29 Sep 2016 (approved):

	'name' has been modified:
		Before: Protein Quaternary Structure database
		After: Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 09:46, 29 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Kim Henrick
		Added:
		Removed:

Support

General

FAQ	PDBePISA Tips
support email	EBI Support
help	http://www.ebi.ac.uk/pdbe/pqs/pqs-help.h ...
online documentation	Visualization documentation
training	Tutorial

Additional Information

Contact

Kim Henrick

TeSS training resources

PDBePISA: Identifying and interpreting the likely biological assemblies of a protein structure

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Access

Download	http://www.ebi.ac.uk/pdbe/pisa/pi_download.html
search	http://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver

REST Web Services

PDBePISA Access

http://www.ebi.ac.uk/pdbe/pisa/pi_link.html

Publications

PQS: a protein quaternary structure file server.

Henrick K., Thornton JM.,
Trends Biochem. Sci. 1998

View Paper (PubMed) View Publication

Inference of macromolecular assemblies from crystalline state.

Krissinel E,Henrick K
J Mol Biol 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Protein Data Bank Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Protein Data Bank in Europe

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

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