Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

Abbreviation:PDBePISA

General Information

The Protein Quaternary Structure file server (PDBePISA) is an internet resource that makes available coordinates for likely quaternary states for structures contained in the Brookhaven Protein Data Bank (PDB) that were determined by X-ray crystallography.

Homepage http://www.ebi.ac.uk/pdbe/pqs/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 1997

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PDBePISA; Protein Data Bank: Proteins, Interfaces, Structures and Assemblies; DOI: https://doi.org/10.25504/FAIRsharing.nm2z1h; Last edited: Feb. 10, 2020, 5:13 p.m.; Last accessed: Sep 24 2020 3:02 a.m.

Publication for citation Inference of macromolecular assemblies from crystalline state. Krissinel E,Henrick K; J Mol Biol ; 2007; 10.1016/j.jmb.2007.05.022;

Record updated: Feb. 10, 2020, 5:13 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 17:13, 10 Feb 2020 (approved):

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Structural Biology
		Added:
			Structural Biology
		Removed:
			Life Science

	'accessPoints' has been modified:
		Before:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		After:
			Other|https://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Added:
			Other|https://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Removed:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			email|support@ebi.ac.uk
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		After:
			FAQ|https://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			TeSS training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			email|support@ebi.ac.uk
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_privacy.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_vlog.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_disclaimer.html
			training|https://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Added:
			FAQ|https://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			TeSS training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_privacy.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_vlog.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			online documentation|https://www.ebi.ac.uk/pdbe/pisa/pi_disclaimer.html
			training|https://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Removed:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf

	'countries' has been modified:
		Before:
			European Union
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Removed:
			European Union

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 13:31, 10 Jan 2019 (approved):

	'supportLinks' has been modified:
		Before:
			email|support@ebi.ac.uk
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
		After:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			email|support@ebi.ac.uk
			help|http://www.ebi.ac.uk/pdbe/pqs/pqs-help.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Added:
			FAQ|http://www.ebi.ac.uk/pdbe/pisa/pi_tips.html
			online documentation|http://www.ebi.ac.uk/pdbe/pisa/pi_visual.html
			tess training|https://tess.elixir-europe.org/materials/pdbepisa-identifying-and-interpreting-the-likely-biological-assemblies-of-a-protein-structure
			training|http://www.ebi.ac.uk/pdbe/docs/Tutorials/workshop_tutorials/PDBepisa.pdf
		Removed:

	'accessPoints' has been modified:
		Before:
		After:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Added:
			REST|http://www.ebi.ac.uk/pdbe/pisa/pi_link.html|PDBePISA Access
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			PQS: a protein quaternary structure file server.|Henrick K., Thornton JM., |Trends Biochem. Sci.|1998
		After:
			PQS: a protein quaternary structure file server.|Henrick K., Thornton JM., |Trends Biochem. Sci.|1998
			Inference of macromolecular assemblies from crystalline state.|Krissinel E,Henrick K|J Mol Biol|2007
		Added:
			Inference of macromolecular assemblies from crystalline state.|Krissinel E,Henrick K|J Mol Biol|2007
		Removed:

	'organizations' has been modified:
		Before:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 11:48, 29 Sep 2016 (approved):

	'name' has been modified:
		Before: Protein Quaternary Structure database
		After: Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

Edits to 'https://fairsharing.org/FAIRsharing.nm2z1h' by 'The FAIRsharing Team' at 09:46, 29 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Kim Henrick
		Added:
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

FAQ	PDBePISA Tips
support email	EBI Support
online documentation	Privacy
online documentation	Version Log
online documentation	Visualization documentation
online documentation	Disclaimer
training	Tutorial

Additional Information

Contact

Kim Henrick

TeSS training resources

PDBePISA: Identifying and interpreting the likely biological assemblies of a protein structure

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Release

Download

https://www.ebi.ac.uk/pdbe/pisa/pi_download.html

Data Access

https://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver

Other Web Services

PDBePISA Access

https://www.ebi.ac.uk/pdbe/pisa/pi_link.html

Publications

PQS: a protein quaternary structure file server.

Henrick K., Thornton JM.,
Trends Biochem. Sci. 1998

View Paper (PubMed) View Publication

Inference of macromolecular assemblies from crystalline state.

Krissinel E,Henrick K
J Mol Biol 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Protein Data Bank Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Protein Data Bank in Europe

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Protein Data Bank: Proteins, Interfaces, Structures and Assemblies

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