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Flora Phenotype Ontology

Abbreviation: FLOPO

General Information

The Flora Phenotype Ontology is a domain ontology for the description of plant characters. FLOPO contains more than 25000 phenotype and traits classes, the creation of FLOPO is data-driven: For each trait/phenotype class exists a taxon annotation in the underlying Floras.

Homepage http://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group

Countries that developed this resource Belgium , Germany , Netherlands , Saudi Arabia , United Kingdom

Created in 2013

Taxonomic range

Plantae

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FLOPO; Flora Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ny9vnm; Last edited: Feb. 3, 2020, 5:51 p.m.; Last accessed: May 30 2020 6:46 a.m.

This record is maintained by cpw

Record updated: Feb. 3, 2020, 5:45 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.ny9vnm' by 'The FAIRsharing Team' at 17:45, 03 Feb 2020 (approved):

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			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
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			Biodiversity
			Botany
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			Ontology and Terminology
			Plant Anatomy
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			email|leechuck@leechuck.de
			email|monogatari99@gmail.com
			email|Thomas.Hamann@naturalis.nl
			email|george.gosline@gmail.com
			email|quentingroom@gmail.com
			online documentation|https://github.com/flora-phenotype-ontology/flopoontology
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			email|leechuck@leechuck.de
			email|monogatari99@gmail.com
			email|Thomas.Hamann@naturalis.nl
			email|george.gosline@gmail.com
			email|quentingroom@gmail.com
			online documentation|https://github.com/flora-phenotype-ontology/flopoontology
			online documentation|https://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group
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			online documentation|https://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group
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Edits to 'https://fairsharing.org/FAIRsharing.ny9vnm' by 'The FAIRsharing Team' at 15:36, 02 May 2019 (approved):

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			email|leechuck@leechuck.de
			email|monogatari99@gmail.com
			email|Thomas.Hamann@naturalis.nl
			email|george.gosline@gmail.com
			email|quentingroom@gmail.com
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			email|leechuck@leechuck.de
			email|monogatari99@gmail.com
			email|Thomas.Hamann@naturalis.nl
			email|george.gosline@gmail.com
			email|quentingroom@gmail.com
			online documentation|https://github.com/flora-phenotype-ontology/flopoontology
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			online documentation|https://github.com/flora-phenotype-ontology/flopoontology
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Edits to 'https://fairsharing.org/FAIRsharing.ny9vnm' by 'The FAIRsharing Team' at 11:40, 29 Apr 2019 (approved):

	'onto_disciplines' has been modified:
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			Life Sciences
			Ontology and Terminology
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			Biodiversity
			Botany
			Life Sciences
			Ontology and Terminology
			Plant Anatomy
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			Biodiversity
			Botany
			Plant Anatomy
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			Plant Ontology
			Phenotypic QualiTy Ontology
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			Plant Ontology
			Phenotypic QualiTy Ontology
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			phenotype
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Edits to 'https://fairsharing.org/FAIRsharing.ny9vnm' by 'The FAIRsharing Team' at 06:08, 28 Nov 2016 (approved):

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			http://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group#The_Team
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			Robert Hoehndorf
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Support

General

support email	leechuck@leechuck.de
support email	monogatari99@gmail.com
support email	Thomas.Hamann@naturalis.nl
support email	george.gosline@gmail.com
support email	quentingroom@gmail.com
online documentation	Github Repository
online documentation	Traits Task Group

Additional Information

Contact

Robert Hoehndorf ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/FLOPO
OBO	http://obofoundry.org/ontology/flopo.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

Data Access

AgroPortal: Browse / Download

http://agroportal.lirmm.fr/ontologies/FLOPO

Publications

Enriched biodiversity data as a resource and service.

Vos RA,Biserkov JV,Balech B,Beard N,Blissett M,Brenninkmeijer C,van Dooren T,Eades D,Gosline G,Groom QJ,Hamann TD,Hettling H,Hoehndorf R,Holleman A,Hovenkamp P,Kelbert P,King D,Kirkup D,Lammers Y,DeMeulemeester T,Mietchen D,Miller JA,Mounce R,Nicolson N,Page R,Pawlik A,Pereira S,Penev L,Richards K,Sautter G,Shorthouse DP,Tahtinen M,Weiland C,Williams AR,Sierra S
Biodivers Data J 2014

View Paper (PubMed) View Publication

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.

Hoehndorf R,Alshahrani M,Gkoutos GV,Gosline G,Groom Q,Hamann T,Kattge J,de Oliveira SM,Schmidt M,Sierra S,Smets E,Vos RA,Weiland C
J Biomed Semantics 2016

View Paper (PubMed) View Publication

FLOPO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Thesaurus of Plant Characteristics

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

DES-TOMATO
DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by cpw

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Deutsche Forschungsgemeinschaft (Government body)
Plant Phenotyping Network, European Commission FP7 (Government body)
Pro-iBiosphere project, European Commission FP7 (Government body)
National Science Foundation (NSF), USA (Government body)

Grant Number(s)

IOS-1340112 (National Science Foundation (NSF), USA)
284443 (Plant Phenotyping Network, European Commission FP7)
312848 (Pro-iBiosphere project, European Commission FP7)
BB/J004464/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
HI 1538/2-2 (Deutsche Forschungsgemeinschaft)

Flora Phenotype Ontology

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