databases > DOI:10.25504/FAIRsharing.oAJNHO
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ready An INtegrated Data warehouse of mIcrobial GenOmes

Abbreviation:INDIGO

General Information
INDIGO enables the integration of annotations for the exploration and analysis of newly sequenced microbial genomes.

Homepage http://www.cbrc.kaust.edu.sa/indigo

Countries that developed this resource Saudi Arabia

Created in 2013





How to cite this record FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Sep 28 2021 9:02 a.m.

Publication for citation  INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles. Alam I,Antunes A,Kamau AA,Ba Alawi W,Kalkatawi M,Stingl U,Bajic VB; PLoS One ; 2013; 10.1371/journal.pone.0082210;


This record is maintained by InterMineTeam

Record added: Dec. 11, 2018, 2:01 p.m.
Record updated: May 8, 2019, 3:07 p.m. by The FAIRsharing Team.

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In Collections
RDA Covid-19 WG Resources
InterMine

Support

General

online documentation INDIGO Team
online documentation Data Categories

Additional Information

Contact Intikhab Alam

TeSS training resources 

InterMine user tutorial

InterMine user manual



Tools
BLAST Interface to INDIGO http://www.cbrc.kaust.edu.sa/indigo/blast.do

Access / Retrieve Data

Conditions of Use

Applies to: Database software

Data Access

Search Within Genomic Regions http://www.cbrc.kaust.edu.sa/indigo/genomicRegionSearch.do
Advanced Search (Query Builder) http://www.cbrc.kaust.edu.sa/indigo/customQuery.do
Search Against A List http://www.cbrc.kaust.edu.sa/indigo/bag.do
Search Via Pre-Defined Queries http://www.cbrc.kaust.edu.sa/indigo/templates.do

REST Web Services

Web Service Client (Perl, Python, Ruby, Java) http://www.cbrc.kaust.edu.sa/indigo/api.do


Publications

INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.

Alam I,Antunes A,Kamau AA,Ba Alawi W,Kalkatawi M,Stingl U,Bajic VB
PLoS One 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.