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Biological Magnetic Resonance Databank

Abbreviation:BMRB

Recommended

General Information

BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.

Homepage http://www.bmrb.wisc.edu/

Countries that developed this resource United States

Created in 2007

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: BMRB; Biological Magnetic Resonance Databank; DOI: https://doi.org/10.25504/FAIRsharing.p06nme; Last edited: June 30, 2021, 10:10 a.m.; Last accessed: Jan 26 2022 9:19 p.m.

Publication for citation BioMagResBank. Ulrich EL,Akutsu H,Doreleijers JF,Harano Y,Ioannidis YE,Lin J,Livny M,Mading S,Maziuk D,Miller Z,Nakatani E,Schulte CF,Tolmie DE,Kent Wenger R,Yao H,Markley JL; Nucleic Acids Res ; 2007; 10.1093/nar/gkm957 ;

Record updated: June 24, 2021, 11 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.p06nme' by 'The FAIRsharing Team' at 11:00, 24 Jun 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Publicly available data||Data
		After:
			BMRB Attribution required, Publicly available data|https://bmrb.io/|Data
		Added:
			BMRB Attribution required, Publicly available data|https://bmrb.io/|Data
		Removed:
			Attribution required||Data
			Publicly available data||Data

	'onto_domains' has been modified:
		Before:
			Protein structure
			molecular entity
			nuclear magnetic resonance spectroscopy
			nucleic acid
			peptide
			protein
			spectrum
			structure
		After:
			Protein structure
			Structure
			molecular entity
			nuclear magnetic resonance spectroscopy
			nucleic acid
			peptide
			protein
			spectrum
			structure
		Added:
			Structure
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.p06nme' by 'The FAIRsharing Team' at 10:11, 04 Oct 2020 (approved):

	'organizations' has been modified:
		Before:
			wwPDB|http://www.wwpdb.org/|Maintains
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
		After:
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			University of Wisconsin-Madison|http://www.wisc.edu/|Maintains
			National Library of Medicine (NLM)), Bethesda, MD, USA|http://www.nlm.gov|Funds
		Added:
			University of Wisconsin-Madison|http://www.wisc.edu/|Maintains
			National Library of Medicine (NLM)), Bethesda, MD, USA|http://www.nlm.gov|Funds
		Removed:
			wwPDB|http://www.wwpdb.org/|Maintains

	'standardsImplemented' has been modified:
		Before:
			Protein Data Bank Format
			NMR Self-defining Text Archive and Retrieval format
			Nuclear Magnetic Resonance Controlled Vocabulary
			Collaborative Computing Project for NMR
			Nuclear Magnetic Resonance Markup Language
		After:
			Protein Data Bank Format
			NMR Self-defining Text Archive and Retrieval format
			Nuclear Magnetic Resonance Controlled Vocabulary
			Collaborative Computing Project for NMR
			Nuclear Magnetic Resonance Markup Language
			macromolecular Crystallographic Information File
		Added:
			macromolecular Crystallographic Information File
		Removed:

	'supportLinks' has been modified:
		Before:
			mailing list|http://lists.bmrb.wisc.edu/
			online documentation|http://www.bmrb.wisc.edu/education/
		After:
			blog|http://www.bmrb.wisc.edu/bmrb/news/
			mailing list|http://lists.bmrb.wisc.edu/
			online documentation|http://www.bmrb.wisc.edu/education/
			online documentation|http://www.bmrb.wisc.edu/standards/
		Added:
			blog|http://www.bmrb.wisc.edu/bmrb/news/
			online documentation|http://www.bmrb.wisc.edu/standards/
		Removed:

	'onto_domains' has been modified:
		Before:
			molecular entity
			nuclear magnetic resonance spectroscopy
			spectrum
			structure
		After:
			Protein structure
			molecular entity
			nuclear magnetic resonance spectroscopy
			nucleic acid
			peptide
			protein
			spectrum
			structure
		Added:
			Protein structure
			nucleic acid
			peptide
			protein
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Structural Biology
		Added:
			Structural Biology
		Removed:
			Life Science

	'dataProcesses' has been modified:
		Before:
			FTP access, data access, http://www.bmrb.wisc.edu/ftp/pub/bmrb/
			search, data access, http://www.bmrb.wisc.edu/search/
			submit, data curation, http://www.bmrb.wisc.edu/deposit/
			Browse, data access, http://www.bmrb.wisc.edu/search/query_grid/initial_grid.html
		After:
			FTP access, data release, http://www.bmrb.wisc.edu/ftp/pub/bmrb/
			search, data access, http://www.bmrb.wisc.edu/search/
			submit, data curation, http://www.bmrb.wisc.edu/deposit/
			Browse, data access, http://www.bmrb.wisc.edu/search/query_grid/initial_grid.html
		Added:
			FTP access, data release, http://www.bmrb.wisc.edu/ftp/pub/bmrb/
		Removed:
			FTP access, data access, http://www.bmrb.wisc.edu/ftp/pub/bmrb/

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.|Markley JL., Ulrich EL., Berman HM., Henrick K., Nakamura H., Akutsu H., |J. Biomol. NMR|2008
			BioMagResBank.|Ulrich EL., Akutsu H., Doreleijers JF., Harano Y., Ioannidis YE., Lin J., Livny M., Mading S., Maziuk D., Miller Z., Nakatani E., Schulte CF., Tolmie DE., Kent Wenger R., Yao H., Markley JL., |Nucleic Acids Res.|2008
		After:
			BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.|Markley JL., Ulrich EL., Berman HM., Henrick K., Nakamura H., Akutsu H., |J. Biomol. NMR|2008
			BioMagResBank.|Ulrich EL,Akutsu H,Doreleijers JF,Harano Y,Ioannidis YE,Lin J,Livny M,Mading S,Maziuk D,Miller Z,Nakatani E,Schulte CF,Tolmie DE,Kent Wenger R,Yao H,Markley JL|Nucleic Acids Res|2007
		Added:
			BioMagResBank.|Ulrich EL,Akutsu H,Doreleijers JF,Harano Y,Ioannidis YE,Lin J,Livny M,Mading S,Maziuk D,Miller Z,Nakatani E,Schulte CF,Tolmie DE,Kent Wenger R,Yao H,Markley JL|Nucleic Acids Res|2007
		Removed:
			BioMagResBank.|Ulrich EL., Akutsu H., Doreleijers JF., Harano Y., Ioannidis YE., Lin J., Livny M., Mading S., Maziuk D., Miller Z., Nakatani E., Schulte CF., Tolmie DE., Kent Wenger R., Yao H., Markley JL., |Nucleic Acids Res.|2008

	'tools' has been modified:
		Before:
			BLAST|PSVS Version 1.5, PDBStat Version 5.12|http://www.bmrb.wisc.edu/data_access/fasta.shtml
			Protein Structure Validation Software Suite|PSVS Version 1.5, PDBStat Version 5.12|http://psvs-1_5-dev.nesg.org/
		After:
			Validation Tools Listing||http://www.bmrb.wisc.edu/validate/
		Added:
			Validation Tools Listing||http://www.bmrb.wisc.edu/validate/
		Removed:
			BLAST|PSVS Version 1.5, PDBStat Version 5.12|http://www.bmrb.wisc.edu/data_access/fasta.shtml
			Protein Structure Validation Software Suite|PSVS Version 1.5, PDBStat Version 5.12|http://psvs-1_5-dev.nesg.org/

In Collections

Data Citation Implementation

Support

General

blog	News
Mailing List	BMRB Mailing List
online documentation	Education and Outreach
online documentation	Standards Used

Additional Information

Contact

bmrbhelp@bmrb.wisc.edu

Tools

Validation Tools Listing

http://www.bmrb.wisc.edu/validate/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

BMRB Attribution required, Publicly available data

Data Release

FTP access

http://www.bmrb.wisc.edu/ftp/pub/bmrb/

Data Curation

submit

http://www.bmrb.wisc.edu/deposit/

Data Access

search	http://www.bmrb.wisc.edu/search/
Browse	http://www.bmrb.wisc.edu/search/query_grid/initial_grid.html

Publications

BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.

Markley JL., Ulrich EL., Berman HM., Henrick K., Nakamura H., Akutsu H.,
J. Biomol. NMR 2008

View Paper (PubMed) View Publication

BioMagResBank.

Ulrich EL,Akutsu H,Doreleijers JF,Harano Y,Ioannidis YE,Lin J,Livny M,Mading S,Maziuk D,Miller Z,Nakatani E,Schulte CF,Tolmie DE,Kent Wenger R,Yao H,Markley JL
Nucleic Acids Res 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Nuclear Magnetic Resonance Controlled Vocabulary

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
National Library of Medicine (NLM)), Bethesda, MD, USA (Government body)

Maintains

University of Wisconsin-Madison (University) Lead

Biological Magnetic Resonance Databank

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