GigaScience - Minimum Standards of Reporting Checklist

General Information

Homepage https://academic.oup.com/gigascience/pages/instructions_to_authors

Countries that developed this resource Hong Kong , Worldwide

Published in 2015

Type: Journal

Description:

This is the main checklist/guideline for data deposition and formatting for papers submitted to GigaScience and GigaByte journals published by GigaScience Press.

Collections/recommendations derived from this policy:

This policy implements the recommendation GigaScience.

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All

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User-defined Tags

Data sharing

Metadata standardization

How to cite this record FAIRsharing.org: GigaScience - Minimum Standards of Reporting Checklist; DOI: https://doi.org/10.25504/FAIRsharing.prdtva; Last edited: Feb. 10, 2021, 9:53 a.m.; Last accessed: Apr 10 2021 2:52 p.m.

This record is maintained by GigaScience Press (GigaScience) , GigaScience (scotted400) ORCID and GigaDB

Record added: Dec. 16, 2016, 10:14 a.m. Record updated: Feb. 10, 2021, 9:49 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 09:49, 10 Feb 2021 (approved):

	'onto_domains' has been modified:
		Before:
			Bibliography
			Experiment report
			publication
		After:
			Bibliography
			protocol
			publication
		Added:
			protocol
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'GigaScience' at 10:14, 29 Nov 2020 (approved):

	'licences' has been modified:
		Before:
			OUP Privacy Policy|https://academic.oup.com/journals/pages/about_us/legal/privacy_policy|Undefined
		After:
			GigaByte Privacy Policy|https://gigabytejournal.com/privacy-policy|Undefined
		Added:
			GigaByte Privacy Policy|https://gigabytejournal.com/privacy-policy|Undefined
		Removed:
			OUP Privacy Policy|https://academic.oup.com/journals/pages/about_us/legal/privacy_policy|Undefined

	'description' has been modified:
		Before: This is the main checklist/guideline for data deposition and formatting for papers submitted to GigaScience, an OUP journal.
		After: This is the main checklist/guideline for data deposition and formatting for papers submitted to GigaScience and GigaByte journals published by GigaScience Press.

	'countries' has been modified:
		Before:
			United Kingdom
			Worldwide
		After:
			Hong Kong
			Worldwide
		Added:
			Hong Kong
		Removed:
			United Kingdom

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 15:11, 07 Nov 2018 (approved):

	'std_implementation' has been modified:
		Before:
			Investigation Study Assay Tabular
			STrengthening the Reporting of OBservational studies in Epidemiology
			Preferred Reporting Items for Systematic reviews and Meta-Analyses
			MIAME Notation in Markup Language
			STAndards for the Reporting of Diagnostic accuracy
			Animals in Research: Reporting In Vivo Experiments
			CONSOlidated standards of Reporting Trials
			CONsolidated Standards of Reporting Trials - Unofficial Extensions
			CONSOlidated Standards of Reporting Trials - Official Extensions
			Minimum Information about any (x) Sequence
			Consolidated criteria for reporting qualitative research
			Case Reports
			FORCE11 Data Citation Principles
			Consolidated Health Economic Evaluation Reporting Standards
		After:
			Investigation Study Assay Tabular
			STrengthening the Reporting of OBservational studies in Epidemiology
			Preferred Reporting Items for Systematic reviews and Meta-Analyses
			MIAME Notation in Markup Language
			STAndards for the Reporting of Diagnostic accuracy
			Animals in Research: Reporting In Vivo Experiments
			CONSOlidated standards of Reporting Trials
			CONsolidated Standards of Reporting Trials - Unofficial Extensions
			CONSOlidated Standards of Reporting Trials - Official Extensions
			Minimum Information about any (x) Sequence
			Consolidated criteria for reporting qualitative research
			Case Reports
			FORCE11 Data Citation Principles
			Consolidated Health Economic Evaluation Reporting Standards
			Research Resource Identifiers
		Added:
			Research Resource Identifiers
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 13:24, 07 Nov 2018 (approved):

	'std_implementation' has been modified:
		Before:
			Investigation Study Assay Tabular
			STrengthening the Reporting of OBservational studies in Epidemiology
			Preferred Reporting Items for Systematic reviews and Meta-Analyses
			MIAME Notation in Markup Language
			STAndards for the Reporting of Diagnostic accuracy
			Animals in Research: Reporting In Vivo Experiments
			CONSOlidated standards of Reporting Trials
			CONsolidated Standards of Reporting Trials - Unofficial Extensions
			CONSOlidated Standards of Reporting Trials - Official Extensions
			Recommended reporting guidelines for life science resources
			Minimum Information about any (x) Sequence
			Consolidated criteria for reporting qualitative research
			Case Reports
			FORCE11 Data Citation Principles
			Consolidated Health Economic Evaluation Reporting Standards
		After:
			Investigation Study Assay Tabular
			STrengthening the Reporting of OBservational studies in Epidemiology
			Preferred Reporting Items for Systematic reviews and Meta-Analyses
			MIAME Notation in Markup Language
			STAndards for the Reporting of Diagnostic accuracy
			Animals in Research: Reporting In Vivo Experiments
			CONSOlidated standards of Reporting Trials
			CONsolidated Standards of Reporting Trials - Unofficial Extensions
			CONSOlidated Standards of Reporting Trials - Official Extensions
			Minimum Information about any (x) Sequence
			Consolidated criteria for reporting qualitative research
			Case Reports
			FORCE11 Data Citation Principles
			Consolidated Health Economic Evaluation Reporting Standards
		Added:
		Removed:
			Recommended reporting guidelines for life science resources

	'name' has been modified:
		Before: Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist
		After: GigaScience - Minimum Standards of Reporting Checklist

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 10:41, 06 Feb 2018 (approved):

	'db_implementation' has been modified:
		Before:
			biodbcore-000001|GenBank
			biodbcore-000027|The DNA Data Bank of Japan
			biodbcore-000054|IntAct molecular interaction database
			biodbcore-000168|MetaboLights
			biodbcore-000196|Addgene
			biodbcore-000256|The Cambridge Structural Database
			biodbcore-000303|figshare
			biodbcore-000305|ArrayExpress
			biodbcore-000310|European Nucleotide Archive
			biodbcore-000325|PRoteomics IDEntifications database
			biodbcore-000331|HUGO Gene Nomenclature Committee 
			biodbcore-000410|NeuroMorpho.Org
			biodbcore-000427|caNanoLab
			biodbcore-000438|Database of Single Nucleotide Polymorphism
			biodbcore-000441|Gene Expression Omnibus
			biodbcore-000444|Sequence Read Archive
			biodbcore-000455|PubChem
			biodbcore-000462|Database of Genotypes and Phenotypes
			biodbcore-000463|Database of genomic structural VARiation
			biodbcore-000464|Dryad
			biodbcore-000513|Nucleic Acids Database
			biodbcore-000539|TreeBase
			biodbcore-000544|UniProt Knowledgebase
			biodbcore-000569|miRBase Sequence Database
			biodbcore-000595|Giga Science Database
			biodbcore-000596|Electron Microscopy Data Bank
			biodbcore-000598|ProteomeXchange
			biodbcore-000599|EBI Metagenomics
			biodbcore-000620|OpenfMRI
			biodbcore-000623|NeuroVault
			biodbcore-000624|Coherent X-ray Imaging Data Bank
			biodbcore-000625| International Neuroimaging Data-Sharing Initiative
			biodbcore-000627|European Variation Archive
			biodbcore-000628|Database of Genomic Variants Archive
			biodbcore-000631|Experimental data repository for KInetic MOdels of biological SYStems
			biodbcore-000633|Pangaea - Data Publisher for Earth and Environmental Science
			biodbcore-000635|Global Biodiversity Information Facility
			biodbcore-000655|Open Science Framework
			biodbcore-000681|Worldwide Protein Data Bank
			biodbcore-000685|BioSample at the NCBI
			biodbcore-000690|PlasmID
		After:
			biodbcore-000001|GenBank
			biodbcore-000027|The DNA Data Bank of Japan
			biodbcore-000054|IntAct molecular interaction database
			biodbcore-000168|MetaboLights
			biodbcore-000196|Addgene
			biodbcore-000256|The Cambridge Structural Database
			biodbcore-000303|figshare
			biodbcore-000305|ArrayExpress
			biodbcore-000310|European Nucleotide Archive
			biodbcore-000325|PRoteomics IDEntifications database
			biodbcore-000331|HUGO Gene Nomenclature Committee 
			biodbcore-000410|NeuroMorpho.Org
			biodbcore-000427|caNanoLab
			biodbcore-000438|Database of Single Nucleotide Polymorphism
			biodbcore-000441|Gene Expression Omnibus
			biodbcore-000444|Sequence Read Archive
			biodbcore-000455|PubChem
			biodbcore-000462|Database of Genotypes and Phenotypes
			biodbcore-000463|Database of genomic structural VARiation
			biodbcore-000464|Dryad
			biodbcore-000513|Nucleic Acids Database
			biodbcore-000539|TreeBase
			biodbcore-000544|UniProt Knowledgebase
			biodbcore-000569|miRBase Sequence Database
			biodbcore-000595|Giga Science Database
			biodbcore-000596|Electron Microscopy Data Bank
			biodbcore-000598|ProteomeXchange
			biodbcore-000599|EBI Metagenomics
			biodbcore-000620|OpenfMRI
			biodbcore-000623|NeuroVault
			biodbcore-000624|Coherent X-ray Imaging Data Bank
			biodbcore-000625| International Neuroimaging Data-Sharing Initiative
			biodbcore-000627|European Variation Archive
			biodbcore-000628|Database of Genomic Variants Archive
			biodbcore-000631|Experimental data repository for KInetic MOdels of biological SYStems
			biodbcore-000633|Pangaea - Data Publisher for Earth and Environmental Science
			biodbcore-000635|Global Biodiversity Information Facility
			biodbcore-000655|Open Science Framework
			biodbcore-000681|Worldwide Protein Data Bank
			biodbcore-000685|BioSample at the NCBI
			biodbcore-000690|PlasmID
			biodbcore-001004|FAIRsharing
		Added:
			biodbcore-001004|FAIRsharing
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 22:40, 23 Mar 2017 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None Domain list has changed:  Previous values: Biological databases|| Biomedical Science|None| Data sharing|| Experiment metadata|| Life Science|domain| Metadata standards|| New values:  Biological databases|| Biomedical Science|None| Data sharing|| Experiment metadata|| Life Science|domain| Metadata standards|| Information regarding supporting publications|| Publications|| Data|property| Licenses have changed:  Previous values: New values:  Privacy Policy

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 09:47, 22 Mar 2017 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None Support links have changed:  Previous values: @GigaScience New values:  @GigaScience https://global.oup.com/academic/authors/author-handbook/?lang=en&cc=us Domain list has changed:  Previous values: Biological databases|| Biomedical Science|None| Data sharing|| Experiment metadata|| Life Science|domain| Metadata standards|| New values:  Biological databases|| Biomedical Science|None| Data sharing|| Experiment metadata|| Life Science|domain| Metadata standards|| Information regarding supporting publications||

Edits to 'https://fairsharing.org/FAIRsharing.prdtva' by 'The FAIRsharing Team' at 17:43, 19 Dec 2016 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None Implemented databases have changed:  Previous values: biodbcore-000001: GenBank biodbcore-000027: The DNA Data Bank of Japan biodbcore-000054: IntAct molecular interaction database biodbcore-000196: Addgene biodbcore-000256: The Cambridge Structural Database biodbcore-000303: figshare biodbcore-000305: ArrayExpress biodbcore-000310: European Nucleotide Archive biodbcore-000325: PRoteomics IDEntifications database biodbcore-000331: HUGO Gene Nomenclature Committee  biodbcore-000410: NeuroMorpho.Org biodbcore-000427: caNanoLab biodbcore-000438: Database of Single Nucleotide Polymorphism biodbcore-000441: Gene Expression Omnibus biodbcore-000444: Sequence Read Archive biodbcore-000455: PubChem biodbcore-000462: Database of Genotypes and Phenotypes biodbcore-000463: Database of genomic structural VARiation biodbcore-000464: Dryad biodbcore-000513: Nucleic Acids Database biodbcore-000539: TreeBase biodbcore-000544: UniProt Knowledgebase biodbcore-000569: miRBase Sequence Database biodbcore-000595: Giga Science Database biodbcore-000596: Electron Microscopy Data Bank biodbcore-000598: ProteomeXchange biodbcore-000599: EBI Metagenomics biodbcore-000620: OpenfMRI biodbcore-000623: NeuroVault biodbcore-000624: Coherent X-ray Imaging Data Bank biodbcore-000625:  International Neuroimaging Data-Sharing Initiative biodbcore-000627: European Variation Archive biodbcore-000628: Database of Genomic Variants Archive biodbcore-000631: Experimental data repository for KInetic MOdels of biological SYStems biodbcore-000633: Pangaea - Data Publisher for Earth and Environmental Science biodbcore-000635: Global Biodiversity Information Facility biodbcore-000655: Open Science Framework biodbcore-000681: Worldwide Protein Data Bank biodbcore-000685: BioSample at the NCBI biodbcore-000690: PlasmID New values:  biodbcore-000001: GenBank biodbcore-000027: The DNA Data Bank of Japan biodbcore-000054: IntAct molecular interaction database biodbcore-000196: Addgene biodbcore-000256: The Cambridge Structural Database biodbcore-000303: figshare biodbcore-000305: ArrayExpress biodbcore-000310: European Nucleotide Archive biodbcore-000325: PRoteomics IDEntifications database biodbcore-000331: HUGO Gene Nomenclature Committee  biodbcore-000410: NeuroMorpho.Org biodbcore-000427: caNanoLab biodbcore-000438: Database of Single Nucleotide Polymorphism biodbcore-000441: Gene Expression Omnibus biodbcore-000444: Sequence Read Archive biodbcore-000455: PubChem biodbcore-000462: Database of Genotypes and Phenotypes biodbcore-000463: Database of genomic structural VARiation biodbcore-000464: Dryad biodbcore-000513: Nucleic Acids Database biodbcore-000539: TreeBase biodbcore-000544: UniProt Knowledgebase biodbcore-000569: miRBase Sequence Database biodbcore-000595: Giga Science Database biodbcore-000596: Electron Microscopy Data Bank biodbcore-000598: ProteomeXchange biodbcore-000599: EBI Metagenomics biodbcore-000620: OpenfMRI biodbcore-000623: NeuroVault biodbcore-000624: Coherent X-ray Imaging Data Bank biodbcore-000625:  International Neuroimaging Data-Sharing Initiative biodbcore-000627: European Variation Archive biodbcore-000628: Database of Genomic Variants Archive biodbcore-000631: Experimental data repository for KInetic MOdels of biological SYStems biodbcore-000633: Pangaea - Data Publisher for Earth and Environmental Science biodbcore-000635: Global Biodiversity Information Facility biodbcore-000655: Open Science Framework biodbcore-000681: Worldwide Protein Data Bank biodbcore-000685: BioSample at the NCBI biodbcore-000690: PlasmID biodbcore-000168: MetaboLights

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This record is maintained by GigaScience Press (GigaScience) , GigaScience (scotted400) ORCID and GigaDB

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GigaScience/BGI HK Ltd (Company)

Policy External Cross References

TOP Level Data Transparency: 2: Requires data transparency

TOP qualifying comments: GigaScience requires authors to deposit the data set(s) supporting the results reported in submitted manuscripts in a publicly-accessible data repository

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GigaByte Privacy Policy

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