NeuroML

General Information

NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication in the neurosciences. One of the goals of the NeuroML project is to develop standards for model specification that will allow for greater simulator interoperability and model exchange.

Homepage http://www.neuroml.org

Countries that developed this resource Brazil , France , India , United Kingdom , United States

Created in 2001

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Computational Neuroscience

How to cite this record FAIRsharing.org: NeuroML; NeuroML; DOI: https://doi.org/10.25504/FAIRsharing.pwvtn5; Last edited: April 29, 2019, 9:35 a.m.; Last accessed: Mar 04 2021 3:01 a.m.

This record is maintained by pgleeson ORCID

Record updated: April 26, 2019, 1:40 p.m. by pgleeson.

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Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'pgleeson' at 13:40, 26 Apr 2019 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'pgleeson' at 10:41, 09 Apr 2019 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'The FAIRsharing Team' at 11:04, 15 Mar 2018 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'The FAIRsharing Team' at 22:07, 24 Nov 2016 (approved):

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		After: neuroml-technology@lists.sourceforge.net Countries have changed:  Previous values: New values:  United Kingdom Domain list has changed:  Previous values: Brain|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_796 Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 Network interaction model|property|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2306 Neuroscience|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100602 New values:  Brain|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_796 Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 Network interaction model|property|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2306 Neuroscience|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100602 Life Science|domain| Taxonomy list has changed:  Previous values: New values:  Homo sapiens|http://identifiers.org/taxonomy/9606?resource=MIR:00100019 Publication List has changed:  Previous values: NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2 New values:  NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2 Towards NeuroML: model description methods for collaborative modelling in neuroscience. Grants have changed:  Previous values: New values:  G0400598 005490 086699

In Collections

Computational Modeling (COMBINE)

Computational Modeling

FAIRDOM Community Standards

The NormSys Registry for Modeling Standards

ISO/CD 20691 Collection - DRAFT

Systems Medicine

INCF Endorsed standards

Support

General

help	http://www.neuroml.org/introduction.php
help	http://sourceforge.net/p/neuroml/mailman ...

Additional Information

Contact

Padraig Gleeson ORCID

Tools

jNeuroML

https://github.com/NeuroML/jNeuroML

Schemas

Name: NeuroML
Version: 2.0-beta3

Download

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GNU Lesser General Public License (LGPL) 2.1

Publications

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.

PLoS Comput. Biol. 2010

View Paper (PubMed)

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2

Frontiers in Neuroinformatics 2014

View Paper (PubMed)

Towards NeuroML: model description methods for collaborative modelling in neuroscience.

Goddard NH,Hucka M,Howell F,Cornelis H,Shankar K,Beeman D
Philos Trans R Soc Lond B Biol Sci 2001

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (2)

Open Source Brain
Open Source Brain is a resource for sharing and collaboratively developing computational models of neural systems.

EBRAINS
EBRAINS is a platform for sharing brain research data ranging in type as well as spatial and temporal scale. The EBRAINS data curation service aims to provide maximum impact, visibility, reusability, and longevity. The user interface of the EBRAINS Knowledge Graph allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by pgleeson ORCID

Funds

The Wellcome Trust, UK (Charitable foundation)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Medical Research Council (MRC), London, UK (Government body)

Maintains

NeuroML community (Consortium)

Grant Number(s)

005490 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
086699 (The Wellcome Trust, UK)
G0400598 (Medical Research Council (MRC), London, UK)

	Biophysics_v1.8.1.xsd
	Metadata_v1.8.1.xsd
	NeuroML_v2beta3.xsd
	NetworkML_v1.8.1.xsd

NeuroML

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