Update in progress: note to all users. FAIRsharing is always available for you to search and discover databases, standards and data policies. However, for producers of these resources who maintain or wish to add new records, please note that editing is disabled until September while we migrate our data to our new, improved system. Read our blog post or get in touch with us for more details.

NeuroML

General Information

NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication in the neurosciences. One of the goals of the NeuroML project is to develop standards for model specification that will allow for greater simulator interoperability and model exchange.

Homepage http://www.neuroml.org

Countries that developed this resource Brazil , France , India , United Kingdom , United States

Created in 2001

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: NeuroML; NeuroML; DOI: https://doi.org/10.25504/FAIRsharing.pwvtn5; Last edited: April 16, 2021, 3:01 p.m.; Last accessed: Aug 01 2021 11:53 p.m.

This record is maintained by pgleeson ORCID

Record updated: April 16, 2021, 2:56 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'The FAIRsharing Team' at 14:56, 16 Apr 2021 (approved):

	'user_defined_tags' has been modified:
		Before:
			Computational Neuroscience
		After:
		Added:
		Removed:
			Computational Neuroscience

	'onto_disciplines' has been modified:
		Before:
			Cellular Neuroscience
			Life Science
			Neurobiology
			Neuroscience
		After:
			Cellular Neuroscience
			Computational Neuroscience
			Life Science
			Neurobiology
			Neuroscience
		Added:
			Computational Neuroscience
		Removed:

	'publications' has been modified:
		Before:
			NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.||PLoS Comput. Biol.|2010
			LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2||Frontiers in Neuroinformatics|2014
			Towards NeuroML: model description methods for collaborative modelling in neuroscience.|Goddard NH,Hucka M,Howell F,Cornelis H,Shankar K,Beeman D|Philos Trans R Soc Lond B Biol Sci|2001
		After:
			LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.|Cannon RC,Gleeson P,Crook S,Ganapathy G,Marin B,Piasini E,Silver RA|Front Neuroinform|2014
			Towards NeuroML: model description methods for collaborative modelling in neuroscience.|Goddard NH,Hucka M,Howell F,Cornelis H,Shankar K,Beeman D|Philos Trans R Soc Lond B Biol Sci|2001
			NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.|Gleeson P,Crook S,Cannon RC,Hines ML,Billings GO,Farinella M,Morse TM,Davison AP,Ray S,Bhalla US,Barnes SR,Dimitrova YD,Silver RA|PLoS Comput Biol|2010
		Added:
			LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.|Cannon RC,Gleeson P,Crook S,Ganapathy G,Marin B,Piasini E,Silver RA|Front Neuroinform|2014
			NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.|Gleeson P,Crook S,Cannon RC,Hines ML,Billings GO,Farinella M,Morse TM,Davison AP,Ray S,Bhalla US,Barnes SR,Dimitrova YD,Silver RA|PLoS Comput Biol|2010
		Removed:
			NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.||PLoS Comput. Biol.|2010
			LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2||Frontiers in Neuroinformatics|2014

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'pgleeson' at 13:40, 26 Apr 2019 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			Computational Neuroscience
		Added:
			Computational Neuroscience
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Life Sciences
			Neurobiology
		After:
			Cellular Neuroscience
			Life Sciences
			Neurobiology
			Neuroscience
			Theory and Modelling
		Added:
			Cellular Neuroscience
			Neuroscience
			Theory and Modelling
		Removed:

	'homepage' has been modified:
		Before: http://www.neuroml.org/introduction.php
		After: http://www.neuroml.org

	'onto_domains' has been modified:
		Before:
			assay
			brain
			None
		After:
			Mathematical model
			assay
			brain
			modeling and simulation objective
			None
		Added:
			Mathematical model
			modeling and simulation objective
		Removed:

	'countries' has been modified:
		Before:
			United Kingdom
		After:
			Brazil
			France
			India
			United Kingdom
			United States
		Added:
			Brazil
			France
			India
			United States
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'pgleeson' at 13:34, 26 Apr 2019 (approved):

	'taxonomies' has been modified:
		Before:
			Homo sapiens
		After:
			All
		Added:
			All
		Removed:
			Homo sapiens

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'pgleeson' at 10:41, 09 Apr 2019 (approved):

	'name' has been modified:
		Before: Neural Open Markup Language
		After: NeuroML

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'The FAIRsharing Team' at 11:04, 15 Mar 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.pwvtn5' by 'The FAIRsharing Team' at 22:07, 24 Nov 2016 (approved):

	'contactEmail' has been modified:
		Before: 
		After: neuroml-technology@lists.sourceforge.net Countries have changed:  Previous values: New values:  United Kingdom Domain list has changed:  Previous values: Brain|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_796 Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 Network interaction model|property|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2306 Neuroscience|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100602 New values:  Brain|material|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_796 Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 Network interaction model|property|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2306 Neuroscience|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100602 Life Science|domain| Taxonomy list has changed:  Previous values: New values:  Homo sapiens|http://identifiers.org/taxonomy/9606?resource=MIR:00100019 Publication List has changed:  Previous values: NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2 New values:  NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2 Towards NeuroML: model description methods for collaborative modelling in neuroscience. Grants have changed:  Previous values: New values:  G0400598 005490 086699

In Collections

Computational Modeling (COMBINE)

FAIRDOM Community Standards

The NormSys Registry for Modeling Standards

ISO/CD 20691 Collection - DRAFT

Systems Medicine

INCF Endorsed standards

Support

General

help	http://www.neuroml.org/introduction.php
help	http://sourceforge.net/p/neuroml/mailman ...

Additional Information

Contact

Padraig Gleeson ORCID

Tools

jNeuroML

https://github.com/NeuroML/jNeuroML

Schemas

Name: NeuroML
Version: 2.0-beta3

Download

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GNU Lesser General Public License (LGPL) 2.1

Publications

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.

Cannon RC,Gleeson P,Crook S,Ganapathy G,Marin B,Piasini E,Silver RA
Front Neuroinform 2014

View Paper (PubMed) View Publication

Towards NeuroML: model description methods for collaborative modelling in neuroscience.

Goddard NH,Hucka M,Howell F,Cornelis H,Shankar K,Beeman D
Philos Trans R Soc Lond B Biol Sci 2001

View Paper (PubMed) View Publication

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.

Gleeson P,Crook S,Cannon RC,Hines ML,Billings GO,Farinella M,Morse TM,Davison AP,Ray S,Bhalla US,Barnes SR,Dimitrova YD,Silver RA
PLoS Comput Biol 2010

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (2)

Open Source Brain
Open Source Brain is a resource for sharing and collaboratively developing computational models of neural systems.

EBRAINS
EBRAINS is a platform for sharing brain research data ranging in type as well as spatial and temporal scale. The EBRAINS data curation service aims to provide maximum impact, visibility, reusability, and longevity. The user interface of the EBRAINS Knowledge Graph allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by pgleeson ORCID

Funds

The Wellcome Trust, UK (Charitable foundation)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Medical Research Council (MRC), London, UK (Government body)

Maintains

NeuroML community (Consortium)

Grant Number(s)

005490 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
086699 (The Wellcome Trust, UK)
G0400598 (Medical Research Council (MRC), London, UK)

	Biophysics_v1.8.1.xsd
	Metadata_v1.8.1.xsd
	NeuroML_v2beta3.xsd
	NetworkML_v1.8.1.xsd

NeuroML

We need your help!

Developed by

Contact Us

About FAIRsharing