Variation data representation and exchange
Abbreviation: VarioML
Homepage http://varioml.org
Countries that developed this resource European Union , United States
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: VarioML; Variation data representation and exchange; DOI: https://doi.org/10.25504/FAIRsharing.pxvkt0; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Apr 18 2021 5:41 p.m.
Record updated: Nov. 21, 2018, 11:40 a.m. by The FAIRsharing Team.
Conditions of Use
VarioML framework for comprehensive variation data representation and exchange
Byrne M, Fokkema IF, Lancaster O, Adamusiak T, Ahonen-Bishopp A, Atlan D, Beroud C, Cornell M, Dalgleish R, Devereau A, Patrinos GP, Swertz MA, Taschner PE, Thorisson GA, Vihinen M, Brookes AJ, Muilu J
BMC Bioinformatics 2012
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
dbVar is a database of human genomic structural variation where users can search, view, and download data from submitted studies. dbVar stopped supporting data from non-human organisms in 2017, however existing non-human data remains available. In keeping with the common definition of structural variation, most variants are larger than 50 basepairs in length - however a handful of smaller variants may also be found. dbVar provides access to the raw data whenever available, as well as links to additional resources, from both NCBI and elsewhere. It can accept diverse types of events, including inversions, insertions and translocations. Additionally, both germline and somatic variants are accepted.
This record is not implemented by any policy.
Record Maintainer
Funds
European Commission FP7 (Government body)
Maintains
gen2phen (Consortium)
Grant Number(s)
200754 (European Commission FP7)